Difference between revisions of "YdaK"

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===Phenotypes of a mutant ===
 
===Phenotypes of a mutant ===
 +
* not available, the ''[[ydaJ]]-[[ydaK]]-[[ydaL]]-[[ydaM]]-[[ydaN]]'' operon may be essential {{PubMed|22821967}}
  
 
=== Database entries ===
 
=== Database entries ===
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=Expression and regulation=
 
=Expression and regulation=
  
* '''Operon:'''  
+
* '''Operon:''' ''[[ydaJ]]-[[ydaK]]-[[ydaL]]-[[ydaM]]-[[ydaN]]'' (putative ) {{PubMed|22821967}}
  
 
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ydaK_480013_480864_1 ydaK] {{PubMed|22383849}}
 
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ydaK_480013_480864_1 ydaK] {{PubMed|22383849}}

Revision as of 11:31, 25 July 2012

  • Description: potential diguanylate cyclase

Gene name ydaK
Synonyms
Essential no
Product potential diguanylate cyclase
Function unknown
MW, pI 32 kDa, 6.695
Gene length, protein length 849 bp, 283 aa
Immediate neighbours ydaJ, ydaL
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
YdaK context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YdaK expression.png















Categories containing this gene/protein

metabolism of signalling nucleotides

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU04280

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
    • contains a C-terminal GGDEF domain PubMed
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Sigma factor:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Additional publications: PubMed