Difference between revisions of "YdaK"

From SubtiWiki
Jump to: navigation, search
Line 33: Line 33:
 
<br/><br/><br/><br/>
 
<br/><br/><br/><br/>
 
<br/><br/><br/><br/>
 
<br/><br/><br/><br/>
<br/><br/><br/><br/>
 
<br/><br/><br/><br/>
 
 
 
 
<br/><br/>
 
<br/><br/>
  
Line 60: Line 56:
  
 
=== Additional information===
 
=== Additional information===
 
 
  
  
Line 79: Line 73:
  
 
* '''Domains:'''  
 
* '''Domains:'''  
 
+
** contains a C-terminal GGDEF domain {{PubMed|22821967}}
 
* '''Modification:'''
 
* '''Modification:'''
  
Line 135: Line 129:
  
 
=References=
 
=References=
 
+
<pubmed> 22821967 </pubmed>
 
[[Category:Protein-coding genes]]
 
[[Category:Protein-coding genes]]

Revision as of 11:21, 25 July 2012

  • Description: unknown

Gene name ydaK
Synonyms
Essential no
Product unknown
Function unknown
MW, pI 32 kDa, 6.695
Gene length, protein length 849 bp, 283 aa
Immediate neighbours ydaJ, ydaL
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
YdaK context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YdaK expression.png















Categories containing this gene/protein

metabolism of signalling nucleotides

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU04280

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
    • contains a C-terminal GGDEF domain PubMed
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Operon:
  • Sigma factor:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Yun Chen, Yunrong Chai, Jian-hua Guo, Richard Losick
Evidence for cyclic Di-GMP-mediated signaling in Bacillus subtilis.
J Bacteriol: 2012, 194(18);5080-90
[PubMed:22821967] [WorldCat.org] [DOI] (I p)