Difference between revisions of "YdaF"

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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ydaE]]'', ''[[ydaG]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ydaE]]'', ''[[ydaG]]''
 
|-
 
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU04210 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU04210 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU04210 Advanced_DNA]
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU04210 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU04210 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU04210 DNA_with_flanks]
 
|-
 
|-
 
|colspan="2" | '''Genetic context''' <br/> [[Image:ydaF_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:ydaF_context.gif]]

Revision as of 09:30, 14 May 2013

  • Description: similar to acetyltransferase

Gene name ydaF
Synonyms
Essential no
Product unknown
Function unknown
Gene expression levels in SubtiExpress: ydaF
MW, pI 20 kDa, 5.564
Gene length, protein length 549 bp, 183 aa
Immediate neighbours ydaE, ydaG
Sequences Protein DNA DNA_with_flanks
Genetic context
YdaF context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YdaF expression.png
























Categories containing this gene/protein

general stress proteins (controlled by SigB), poorly characterized/ putative enzymes

This gene is a member of the following regulons

SigB regulon

The gene

Basic information

  • Locus tag: BSU04210

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: N-acetyltransferase domain (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Allison V Banse, Arnaud Chastanet, Lilah Rahn-Lee, Errett C Hobbs, Richard Losick
Parallel pathways of repression and antirepression governing the transition to stationary phase in Bacillus subtilis.
Proc Natl Acad Sci U S A: 2008, 105(40);15547-52
[PubMed:18840696] [WorldCat.org] [DOI] (I p)

Anja Petersohn, Haike Antelmann, Ulf Gerth, Michael Hecker
Identification and transcriptional analysis of new members of the sigmaB regulon in Bacillus subtilis.
Microbiology (Reading): 1999, 145 ( Pt 4);869-880
[PubMed:10220166] [WorldCat.org] [DOI] (P p)