Difference between revisions of "YcsD"

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|colspan="2" | '''Genetic context''' <br/> [[Image:ycsD_context.gif]]
 
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|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ycsD_455346_455738_1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:ycsD_expression.png|500px]]
 
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Revision as of 13:26, 8 August 2012

  • Description: β-hydroxyacyl-(acyl carrier protein) dehydratase

Gene name ycsD
Synonyms
Essential no
Product β-hydroxyacyl-ACP dehydratase
Function fatty acid biosynthesis
Gene expression levels in SubtiExpress: ycsD
Metabolic function and regulation of this protein in SubtiPathways:
Lipid synthesis
MW, pI 14 kDa, 4.687
Gene length, protein length 390 bp, 130 aa
Immediate neighbours yczH, ycsE
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
YcsD context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YcsD expression.png































Categories containing this gene/protein

biosynthesis of lipids

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU04030

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: FabZ subfamily (according to Swiss-Prot)
  • Paralogous protein(s): YwpB

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Operon: ycsD (according to DBTBS)
  • Sigma factor:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Yasutaro Fujita, Hiroshi Matsuoka, Kazutake Hirooka
Regulation of fatty acid metabolism in bacteria.
Mol Microbiol: 2007, 66(4);829-39
[PubMed:17919287] [WorldCat.org] [DOI] (P p)