Difference between revisions of "YcnK"
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|style="background:#ABCDEF;" align="center"|'''Function''' || regulation of copper uptake | |style="background:#ABCDEF;" align="center"|'''Function''' || regulation of copper uptake | ||
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| − | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http:// | + | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU03960 ycnK] |
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 21 kDa, 7.371 | |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 21 kDa, 7.371 | ||
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ycnJ]]'', ''[[ycnL]]'' | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ycnJ]]'', ''[[ycnL]]'' | ||
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| − | | | + | |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU03960 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU03960 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU03960 Advanced_DNA] |
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|colspan="2" | '''Genetic context''' <br/> [[Image:ycnK_context.gif]] | |colspan="2" | '''Genetic context''' <br/> [[Image:ycnK_context.gif]] | ||
Revision as of 12:09, 13 May 2013
| Gene name | ycnK |
| Synonyms | |
| Essential | no |
| Product | transcription repressor, DeoR family |
| Function | regulation of copper uptake |
| Gene expression levels in SubtiExpress: ycnK | |
| MW, pI | 21 kDa, 7.371 |
| Gene length, protein length | 570 bp, 190 aa |
| Immediate neighbours | ycnJ, ycnL |
| Sequences | Protein DNA Advanced_DNA |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
trace metal homeostasis (Cu, Zn, Ni, Mn, Mo), transcription factors and their control
This gene is a member of the following regulons
The YcnK regulon:
The gene
Basic information
- Locus tag: BSU03960
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity: repression of ycnK-ycnJ-ycnI expression in the presence of excess copper PubMed
- Protein family: DeoR family of transcription factors
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s): copper acts as corepressor PubMed
- Effectors of protein activity:
- Interactions:
- forms dimers PubMed
Database entries
- Structure:
- UniProt: P94433
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Regulation:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Mohamed Marahiel, Marburg University, Germany homepage
Your additional remarks
References
Reviews
Corinna Rademacher, Bernd Masepohl
Copper-responsive gene regulation in bacteria.
Microbiology (Reading): 2012, 158(Pt 10);2451-2464
[PubMed:22918892]
[WorldCat.org]
[DOI]
(I p)
Original publications
