Difference between revisions of "YcnJ"

From SubtiWiki
Jump to: navigation, search
Line 41: Line 41:
 
===Phenotypes of a mutant ===
 
===Phenotypes of a mutant ===
  
growth-defective under copper-limiting conditions
+
growth-defective under copper-limiting conditions [http://www.ncbi.nlm.nih.gov/sites/entrez/19168619 PubMed]
  
 
=== Database entries ===
 
=== Database entries ===
Line 56: Line 56:
 
=== Basic information/ Evolution ===
 
=== Basic information/ Evolution ===
  
* '''Catalyzed reaction/ biological activity:'''  
+
* '''Catalyzed reaction/ biological activity:''' uptake of copper [http://www.ncbi.nlm.nih.gov/sites/entrez/19168619 PubMed]
  
 
* '''Protein family:'''
 
* '''Protein family:'''
Line 96: Line 96:
 
* '''Sigma factor:'''  
 
* '''Sigma factor:'''  
  
* '''Regulation:'''  
+
* '''Regulation:''' eightfold induction under copper-limiting conditions ([[YcnJ]], [[CsoR]]) [http://www.ncbi.nlm.nih.gov/sites/entrez/19168619 PubMed]
  
* '''Regulatory mechanism:'''  
+
* '''Regulatory mechanism:''' [[YcnJ]]: transcription repression [http://www.ncbi.nlm.nih.gov/sites/entrez/19168619 PubMed]
  
 
* '''Additional information:'''  
 
* '''Additional information:'''  

Revision as of 19:12, 12 March 2009

  • Description: write here

Gene name ycnJ
Synonyms
Essential no
Product
Function unknown
MW, pI 59 kDa, 10.098
Gene length, protein length 1623 bp, 541 aa
Immediate neighbours ycnI, ycnK
Gene sequence (+200bp) Protein sequence
Caution: The sequence for this gene in SubtiList contains errors
Genetic context
YcnJ context.gif



The gene

Basic information

  • Coordinates:

Phenotypes of a mutant

growth-defective under copper-limiting conditions PubMed

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity: uptake of copper PubMed
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization:

Database entries

  • Structure:
  • Swiss prot entry:
  • KEGG entry:
  • E.C. number:

Additional information

Expression and regulation

  • Operon:
  • Sigma factor:
  • Regulation: eightfold induction under copper-limiting conditions (YcnJ, CsoR) PubMed
  • Regulatory mechanism: YcnJ: transcription repression PubMed
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

  1. Chillappagari S, Miethke M, Trip H, Kuipers OP, Marahiel MA (2009) Copper acquisition is mediated by YcnJ and regulated by YcnK and CsoR in Bacillus subtilis. J. Bacteriol. 191: 2362-2370. PubMed
  2. Author1, Author2 & Author3 (year) Title Journal volume: page-page. PubMed