Difference between revisions of "YcdA"

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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yccK]]'', ''[[ycdB]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yccK]]'', ''[[ycdB]]''
 
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU02780 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU02780 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU02780 Advanced_DNA]
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU02780 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU02780 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU02780 DNA_with_flanks]
 
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|colspan="2" | '''Genetic context''' <br/> [[Image:ycdA_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:ycdA_context.gif]]

Revision as of 09:24, 14 May 2013

  • Description: lipoprotein, required for swarming motility

Gene name ycdA
Synonyms
Essential no
Product lipoprotein
Function swarming motility
Gene expression levels in SubtiExpress: ycdA
MW, pI 39 kDa, 4.706
Gene length, protein length 1062 bp, 354 aa
Immediate neighbours yccK, ycdB
Sequences Protein DNA DNA_with_flanks
Genetic context
YcdA context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YcdA expression.png

























Categories containing this gene/protein

membrane proteins, motility and chemotaxis

This gene is a member of the following regulons

Abh regulon, AbrB regulon, DegU regulon

The gene

Basic information

  • Locus tag: BSU02780

Phenotypes of a mutant

  • reduced swarming motility PubMed

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Sigma factor:
  • Regulation:
  • Additional information:
    • The mRNA has a long 5' leader region. This may indicate RNA-based regulation PubMed

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Additional publications: PubMed

Mitsuo Ogura, Kensuke Tsukahara
SwrA regulates assembly of Bacillus subtilis DegU via its interaction with N-terminal domain of DegU.
J Biochem: 2012, 151(6);643-55
[PubMed:22496484] [WorldCat.org] [DOI] (I p)

Irnov Irnov, Cynthia M Sharma, Jörg Vogel, Wade C Winkler
Identification of regulatory RNAs in Bacillus subtilis.
Nucleic Acids Res: 2010, 38(19);6637-51
[PubMed:20525796] [WorldCat.org] [DOI] (I p)

Hannes Hahne, Susanne Wolff, Michael Hecker, Dörte Becher
From complementarity to comprehensiveness--targeting the membrane proteome of growing Bacillus subtilis by divergent approaches.
Proteomics: 2008, 8(19);4123-36
[PubMed:18763711] [WorldCat.org] [DOI] (I p)