Difference between revisions of "YcbH"

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|style="background:#ABCDEF;" align="center"|'''Function''' || galactarate utilization
 
|style="background:#ABCDEF;" align="center"|'''Function''' || galactarate utilization
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU02510 ycbH]
 
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 54 kDa, 5.705   
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 54 kDa, 5.705   

Revision as of 09:24, 8 August 2012

  • Description: galactarate dehydratase

Gene name ycbH
Synonyms garD
Essential no
Product galactarate dehydratase
Function galactarate utilization
Gene expression levels in SubtiExpress: ycbH
MW, pI 54 kDa, 5.705
Gene length, protein length 1530 bp, 510 aa
Immediate neighbours ycbG, ycbJ
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
YcbH context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YcbH expression.png
























Categories containing this gene/protein

utilization of specific carbon sources

This gene is a member of the following regulons

YcbG regulon

The gene

Basic information

  • Locus tag: BSU02510

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity: d-galactarate = 5-dehydro-4-deoxy-D-glucarate + H2O (according to Swiss-Prot)
  • Protein family: uxaA family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]

Additional information

Expression and regulation

  • Sigma factor:
  • Regulation: induced by D-glucarate/galactarate (YcbG) PubMed
  • Regulatory mechanism: YcbG: transcription repression PubMed
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Shigeo Hosoya, Kunio Yamane, Michio Takeuchi, Tsutomu Sato
Identification and characterization of the Bacillus subtilis D-glucarate/galactarate utilization operon ycbCDEFGHJ.
FEMS Microbiol Lett: 2002, 210(2);193-9
[PubMed:12044674] [WorldCat.org] [DOI] (P p)