Difference between revisions of "YbyB"

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mOpxYn <a href="http://ulqkkwxchwku.com/">ulqkkwxchwku</a>, [url=http://azyrxoukujac.com/]azyrxoukujac[/url], [link=http://txggkgpwmdbx.com/]txggkgpwmdbx[/link], http://lcczbnvgwxor.com/
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* '''Description:''' general stress protein, survival of ethanol stress <br/><br/>
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{| align="right" border="1" cellpadding="2"
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|-
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|style="background:#ABCDEF;" align="center"|'''Gene name'''
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|''ybyB''
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|-
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|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
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|-
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|style="background:#ABCDEF;" align="center"| '''Essential''' || no
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|-
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|style="background:#ABCDEF;" align="center"| '''Product''' || unknown
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|-
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|style="background:#ABCDEF;" align="center"|'''Function''' || survival of ethanol  stress
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|-
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU02110 ybyB]
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|-
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 9 kDa, 9.221 
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|-
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|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 258 bp, 86 aa
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|-
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[cypC]]'', ''[[ybeC]]''
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|-
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|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB12005&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
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|-
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|colspan="2" | '''Genetic context''' <br/> [[Image:ybyB_context.gif]]
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<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
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|-
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|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ybyB_230819_231079_-1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:ybyB_expression.png|500px]]
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|-
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|}
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__TOC__
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<br/><br/><br/><br/>
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<br/><br/><br/><br/>
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<br/><br/><br/><br/>
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<br/><br/><br/><br/>
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<br/><br/><br/><br/>
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<br/><br/>
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= [[Categories]] containing this gene/protein =
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{{SubtiWiki category|[[general stress proteins (controlled by SigB)]]}}
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= This gene is a member of the following [[regulons]] =
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{{SubtiWiki regulon|[[SigB regulon]]}}
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=The gene=
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=== Basic information ===
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* '''Locus tag:''' BSU02110
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===Phenotypes of a mutant ===
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=== Database entries ===
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* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/ybyB.html]
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* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG12754]
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=== Additional information===
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=The protein=
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=== Basic information/ Evolution ===
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* '''Catalyzed reaction/ biological activity:'''
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* '''Protein family:'''
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* '''Paralogous protein(s):'''
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=== Extended information on the protein ===
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* '''Kinetic information:'''
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* '''Domains:'''
 +
 
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* '''Modification:'''
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* '''Cofactor(s):'''
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* '''Effectors of protein activity:'''
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* '''[[SubtInteract|Interactions]]:'''
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* '''[[Localization]]:'''
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=== Database entries ===
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* '''Structure:'''
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* '''UniProt:''' [http://www.uniprot.org/uniprot/O31441 O31441]
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* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU02110]
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* '''E.C. number:'''
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=== Additional information===
 +
 
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=Expression and regulation=
 +
 
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* '''Operon:''' ''ybyB'' (according to [http://dbtbs.hgc.jp/COG/prom/ybyB.html DBTBS])
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* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ybyB_230819_231079_-1 ybyB] {{PubMed|22383849}}
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* '''Sigma factor:''' [[SigB]] [http://www.ncbi.nlm.nih.gov/pubmed/15805528 PubMed]
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* '''Regulation:'''  induced by stress ([[SigB]]) [http://www.ncbi.nlm.nih.gov/pubmed/15805528 PubMed]
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* '''Regulatory mechanism:'''
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* '''Additional information:'''
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=Biological materials =
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* '''Mutant:'''
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* '''Expression vector:'''
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* '''lacZ fusion:'''
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* '''GFP fusion:'''
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* '''two-hybrid system:'''
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* '''Antibody:'''
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=Labs working on this gene/protein=
 +
 
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=Your additional remarks=
 +
 
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=References=
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<pubmed>15805528, </pubmed>
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[[Category:Protein-coding genes]]

Revision as of 20:11, 8 August 2012

  • Description: general stress protein, survival of ethanol stress

Gene name ybyB
Synonyms
Essential no
Product unknown
Function survival of ethanol stress
Gene expression levels in SubtiExpress: ybyB
MW, pI 9 kDa, 9.221
Gene length, protein length 258 bp, 86 aa
Immediate neighbours cypC, ybeC
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
YbyB context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YbyB expression.png
























Categories containing this gene/protein

general stress proteins (controlled by SigB)

This gene is a member of the following regulons

SigB regulon

The gene

Basic information

  • Locus tag: BSU02110

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Operon: ybyB (according to DBTBS)
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Dirk Höper, Uwe Völker, Michael Hecker
Comprehensive characterization of the contribution of individual SigB-dependent general stress genes to stress resistance of Bacillus subtilis.
J Bacteriol: 2005, 187(8);2810-26
[PubMed:15805528] [WorldCat.org] [DOI] (P p)

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