Difference between revisions of "YbgB"

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|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 273 bp, 91 aa  
 
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 273 bp, 91 aa  
 
|-
 
|-
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ybgA]]'', ''[[ybgE]]''
+
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[gamR]]'', ''[[ybgE]]''
 
|-
 
|-
 
|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU02380 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU02380 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU02380 DNA_with_flanks]
 
|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU02380 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU02380 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU02380 DNA_with_flanks]
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= This gene is a member of the following [[regulons]] =
 
= This gene is a member of the following [[regulons]] =
 
{{SubtiWiki regulon|[[SigY regulon]]}},
 
{{SubtiWiki regulon|[[SigY regulon]]}},
{{SubtiWiki regulon|[[YbgA regulon]]}}
+
{{SubtiWiki regulon|[[GamR regulon]]}}
  
 
=The gene=
 
=The gene=
Line 61: Line 61:
  
 
=== Additional information===
 
=== Additional information===
 
 
 
  
 
=The protein=
 
=The protein=
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* '''Kinetic information:'''
 
* '''Kinetic information:'''
  
* '''Domains:'''  
+
* '''[[Domains]]:'''  
  
 
* '''Modification:'''
 
* '''Modification:'''
  
* '''Cofactor(s):'''
+
* '''[[Cofactors]]:'''
  
 
* '''Effectors of protein activity:'''
 
* '''Effectors of protein activity:'''
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* '''Operon:'''  
 
* '''Operon:'''  
** ''[[ybgA]]-[[ybgB]]'' {{PubMed|23667565}}  
+
** ''[[gamR]]-[[ybgB]]'' {{PubMed|23667565}}  
 
** ''[[ybgB]]'' {{PubMed|12897008}}
 
** ''[[ybgB]]'' {{PubMed|12897008}}
  
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* '''[[Sigma factor]]:'''
 
* '''[[Sigma factor]]:'''
** ''[[ybgA]]'':  [[SigA]] {{PubMed|23667565}}
+
** ''[[gamR]]'':  [[SigA]] {{PubMed|23667565}}
 
** ''[[ybgB]]'': [[SigY]] {{PubMed|12897008}}
 
** ''[[ybgB]]'': [[SigY]] {{PubMed|12897008}}
  
 
* '''Regulation:'''  
 
* '''Regulation:'''  
** induced by glucosamine ([[YbgA]]) {{PubMed|23667565}}  
+
** induced by glucosamine ([[gamR]]) {{PubMed|23667565}}  
  
 
* '''Regulatory mechanism:'''  
 
* '''Regulatory mechanism:'''  

Revision as of 07:43, 31 March 2014

  • Description: putative immunity protein

Gene name ybgB
Synonyms
Essential no
Product unknown
Function unknown
Gene expression levels in SubtiExpress: ybgB
MW, pI 10 kDa, 8.47
Gene length, protein length 273 bp, 91 aa
Immediate neighbours gamR, ybgE
Sequences Protein DNA DNA_with_flanks
Genetic context
YbgB context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YbgB expression.png















Categories containing this gene/protein

cell envelope stress proteins (controlled by SigM, V, W, X, Y), toxins, antitoxins and immunity against toxins, membrane proteins

This gene is a member of the following regulons

SigY regulon, GamR regulon

The gene

Basic information

  • Locus tag: BSU02380

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:

Extended information on the protein

  • Kinetic information:
  • Modification:
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Isabelle Gaugué, Jacques Oberto, Harald Putzer, Jacqueline Plumbridge
The use of amino sugars by Bacillus subtilis: presence of a unique operon for the catabolism of glucosamine.
PLoS One: 2013, 8(5);e63025
[PubMed:23667565] [WorldCat.org] [DOI] (I e)

Min Cao, Letal Salzberg, Ching Sung Tsai, Thorsten Mascher, Carla Bonilla, Tao Wang, Rick W Ye, Leticia Márquez-Magaña, John D Helmann
Regulation of the Bacillus subtilis extracytoplasmic function protein sigma(Y) and its target promoters.
J Bacteriol: 2003, 185(16);4883-90
[PubMed:12897008] [WorldCat.org] [DOI] (P p)