Difference between revisions of "YbgB"

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|style="background:#ABCDEF;" align="center"|'''Function''' || unknown
 
|style="background:#ABCDEF;" align="center"|'''Function''' || unknown
 
|-
 
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU02380 ybgB]
+
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU02380 ybgB]
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 10 kDa, 8.47   
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 10 kDa, 8.47   
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ybgA]]'', ''[[ybgE]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ybgA]]'', ''[[ybgE]]''
 
|-
 
|-
|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB12032&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
+
|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU02380 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU02380 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU02380 Advanced_DNA]
 
|-
 
|-
 
|colspan="2" | '''Genetic context''' <br/> [[Image:ybgB_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:ybgB_context.gif]]

Revision as of 12:02, 13 May 2013

  • Description: putative immunity protein

Gene name ybgB
Synonyms
Essential no
Product unknown
Function unknown
Gene expression levels in SubtiExpress: ybgB
MW, pI 10 kDa, 8.47
Gene length, protein length 273 bp, 91 aa
Immediate neighbours ybgA, ybgE
Sequences Protein DNA Advanced_DNA
Genetic context
YbgB context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YbgB expression.png
























Categories containing this gene/protein

cell envelope stress proteins (controlled by SigM, V, W, X, Y), toxins, antitoxins and immunity against toxins, membrane proteins

This gene is a member of the following regulons

SigY regulon

The gene

Basic information

  • Locus tag: BSU02380

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Min Cao, Letal Salzberg, Ching Sung Tsai, Thorsten Mascher, Carla Bonilla, Tao Wang, Rick W Ye, Leticia Márquez-Magaña, John D Helmann
Regulation of the Bacillus subtilis extracytoplasmic function protein sigma(Y) and its target promoters.
J Bacteriol: 2003, 185(16);4883-90
[PubMed:12897008] [WorldCat.org] [DOI] (P p)