YabC

• Description: similar to 16S rRNA methyltransferase
  
  

Gene name	yabC
Synonyms
Essential	no
Product	16S rRNA methyltransferase
Function	rRNA modification
Gene expression levels in SubtiExpress: yabC
MW, pI	32 kDa, 5.518
Gene length, protein length	876 bp, 292 aa
Immediate neighbours	yazA, abrB
Sequences	Protein DNA DNA_with_flanks
Genetic context This image was kindly provided by SubtiList
Expression at a glance   PubMed

Categories containing this gene/protein

translation

The gene

Basic information

• Locus tag: BSU00360

Database entries

• BsubCyc: BSU00360

• DBTBS entry: no entry

• SubtiList entry: [1]

Additional information

• The E.coli homolog: rsmI

The protein

Basic information/ Evolution

• Catalyzed reaction/ biological activity:

• Protein family: UPF0011 family (according to Swiss-Prot)

• Paralogous protein(s):

Extended information on the protein

• Kinetic information:

• Domains:

• Modification:

• Cofactor(s):

• Effectors of protein activity:

• Interactions:

• Localization:

Database entries

• BsubCyc: BSU00360

• Structure: 3KWP (from Lactobacillus brevis, 51% identity)

• UniProt: P37544

• KEGG entry: [2]

• E.C. number:

Expression and regulation

• Operon: yaaQ-yaaR-holB-yaaT-yabA-yabB-yazA-yabC PubMed

• Expression browser: yabC PubMed

• Sigma factor:

• Regulation:

• Regulatory mechanism:

• Additional information:

Biological materials

• Mutant:

• Expression vector:

• lacZ fusion:

• GFP fusion:

• two-hybrid system:

• Antibody:

References

Pierre Nicolas, Ulrike Mäder, Etienne Dervyn, Tatiana Rochat, Aurélie Leduc, Nathalie Pigeonneau, Elena Bidnenko, Elodie Marchadier, Mark Hoebeke, Stéphane Aymerich, Dörte Becher, Paola Bisicchia, Eric Botella, Olivier Delumeau, Geoff Doherty, Emma L Denham, Mark J Fogg, Vincent Fromion, Anne Goelzer, Annette Hansen, Elisabeth Härtig, Colin R Harwood, Georg Homuth, Hanne Jarmer, Matthieu Jules, Edda Klipp, Ludovic Le Chat, François Lecointe, Peter Lewis, Wolfram Liebermeister, Anika March, Ruben A T Mars, Priyanka Nannapaneni, David Noone, Susanne Pohl, Bernd Rinn, Frank Rügheimer, Praveen K Sappa, Franck Samson, Marc Schaffer, Benno Schwikowski, Leif Steil, Jörg Stülke, Thomas Wiegert, Kevin M Devine, Anthony J Wilkinson, Jan Maarten van Dijl, Michael Hecker, Uwe Völker, Philippe Bessières, Philippe Noirot
Condition-dependent transcriptome reveals high-level regulatory architecture in Bacillus subtilis.
Science: 2012, 335(6072);1103-6
[PubMed:22383849] [WorldCat.org] [DOI] (I p)

Satoshi Kimura, Tsutomu Suzuki
Fine-tuning of the ribosomal decoding center by conserved methyl-modifications in the Escherichia coli 16S rRNA.
Nucleic Acids Res: 2010, 38(4);1341-52
[PubMed:19965768] [WorldCat.org] [DOI] (I p)