Difference between revisions of "YaaK"

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|style="background:#ABCDEF;" align="center"|'''Function''' || unknown
 
|style="background:#ABCDEF;" align="center"|'''Function''' || unknown
 
|-
 
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU00200 yaaK]
+
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU00200 yaaK]
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 11 kDa, 4.536   
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 11 kDa, 4.536   
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[dnaX]]'', ''[[recR]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[dnaX]]'', ''[[recR]]''
 
|-
 
|-
|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB11796&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
+
|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU00200 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU00200 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU00200 Advanced_DNA]
 
|-
 
|-
 
|colspan="2" | '''Genetic context''' <br/> [[Image:yaaK_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:yaaK_context.gif]]

Revision as of 11:53, 13 May 2013

  • Description: unknown

Gene name yaaK
Synonyms
Essential no
Product unknown
Function unknown
Gene expression levels in SubtiExpress: yaaK
MW, pI 11 kDa, 4.536
Gene length, protein length 321 bp, 107 aa
Immediate neighbours dnaX, recR
Sequences Protein DNA Advanced_DNA
Genetic context
YaaK context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YaaK expression.png
























Categories containing this gene/protein

proteins of unknown function

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU00200

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

  • The E.coli homolog: ybaB

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: UPF0133 family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Operon:
  • Sigma factor:
  • Regulation:
  • Regulatory mechanism:
  • Additional information: the mRNA is very stable (half-life > 15 min) PubMed

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Anne E Cooley, Sean P Riley, Keith Kral, M Clarke Miller, Edward DeMoll, Michael G Fried, Brian Stevenson
DNA-binding by Haemophilus influenzae and Escherichia coli YbaB, members of a widely-distributed bacterial protein family.
BMC Microbiol: 2009, 9;137
[PubMed:19594923] [WorldCat.org] [DOI] (I e)

G Hambraeus, C von Wachenfeldt, L Hederstedt
Genome-wide survey of mRNA half-lives in Bacillus subtilis identifies extremely stable mRNAs.
Mol Genet Genomics: 2003, 269(5);706-14
[PubMed:12884008] [WorldCat.org] [DOI] (P p)