Difference between revisions of "Xpf"

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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[xtrA]]'', ''[[xtmA]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[xtrA]]'', ''[[xtmA]]''
 
|-
 
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU12560 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU12560 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU12560 Advanced_DNA]
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU12560 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU12560 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU12560 DNA_with_flanks]
 
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|colspan="2" | '''Genetic context''' <br/> [[Image:xpf_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:xpf_context.gif]]

Revision as of 09:58, 14 May 2013

Gene name xpf
Synonyms pcf, ykxE
Essential no
Product PBSX prophage RNA polymerase sigma factor
Function transcription of PBSX prophage genes
Gene expression levels in SubtiExpress: xpf
Interactions involving this protein in SubtInteract: Xpf
MW, pI 19 kDa, 8.084
Gene length, protein length 507 bp, 169 aa
Immediate neighbours xtrA, xtmA
Sequences Protein DNA DNA_with_flanks
Genetic context
Xpf context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
Xpf expression.png
























Categories containing this gene/protein

transcription, sigma factors and their control, PBSX prophage

This gene is a member of the following regulons

The Xpf regulon:

The gene

Basic information

  • Locus tag: BSU12560

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Operon:
  • Sigma factor:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

G E McDonnell, H Wood, K M Devine, D J McConnell
Genetic control of bacterial suicide: regulation of the induction of PBSX in Bacillus subtilis.
J Bacteriol: 1994, 176(18);5820-30
[PubMed:8083174] [WorldCat.org] [DOI] (P p)