Wish List

From SubtiWiki
Revision as of 15:48, 4 December 2008 by 134.76.70.252 (talk) (Facts that would be nice to have)
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SubtiWiki is all about making a useful tool for the Bacillus community. It is thus very important to receive feedback on what the community needs.

Essential facts (what every gene page should have)

  • Gene name
  • Function
  • Synonyms
  • Summary (for not self-explanatory functions)
  • DNA and protein sequence
  • Essential?
  • Genetic context
  • References

Facts that would be nice to have

About the gene

  • Coordinates

About the protein

  • catalyzed reaction
    • Kinetics
  • protein family
  • structure (or should it just be linked to the database?)
  • domains
  • Modifications
  • Effectors of protein activity
  • Interactions
  • Localization
  • MW
  • pI

About the expression of the protein

  • Operon
  • Sigma Factor
  • Regulation
    • Inducers
    • Repressors
  • Regulatory mechanism

About available biological materials

  • Mutants
  • Expression vectors
  • lacZ fusions
  • GFP fusions
  • Antibodies

== About the conservation of the gene

Other stuff

  • Groups working on the Gene

Databases that should be linked to the page

  • PDB (Protein Data Bank) - Structures
  • Uniprot
  • KEGG
  • SubtiList (?)