Difference between revisions of "Utilization of specific carbon sources"

From SubtiWiki
Jump to: navigation, search
(Utilization of organic acids)
 
(26 intermediate revisions by 3 users not shown)
Line 7: Line 7:
 
* 2.2.2. [[Utilization of specific carbon sources]]
 
* 2.2.2. [[Utilization of specific carbon sources]]
 
|Related=
 
|Related=
none
+
* [[CcpA regulon]]
 
|}}
 
|}}
  
Line 13: Line 13:
  
 
=== Utilization of organic acids ===  
 
=== Utilization of organic acids ===  
* [[acsA]]
+
* ''[[acsA]]''
* [[acuA]]
+
* ''[[acuA]]''
* [[acuC]]
+
* ''[[acuC]]''
* [[cimH]]
+
* ''[[cimH]]''
* [[citH]]
+
* ''[[citH]]''
* [[citM]]
+
* ''[[citM]]''
* [[citS]]
+
* ''[[citS]]''
* [[citT]]
+
* ''[[citT]]''
* [[dctB]]
+
* ''[[dctB]]''
* [[dctP]]
+
* ''[[dctP]]''
* [[dctR]]
+
* ''[[dctR]]''
* [[dctS]]
+
* ''[[dctS]]''
* [[lutA]]
+
* ''[[hbuT]]''
* [[lutB]]
+
* ''[[lutA]]''
* [[lutC]]
+
* ''[[lutB]]''
* [[lutP]]
+
* ''[[lutC]]''
* [[lutR]]
+
* ''[[lutP]]''
* [[maeA]]
+
* ''[[lutR]]''
* [[maeN]]
+
*'' [[lytS]]''
* [[malK]]
+
* ''[[lytT]]''
* [[malR]]
+
* ''[[maeA]]''
* [[malS]]
+
* ''[[maeN]]''
* [[mleA]]
+
* ''[[malK]]''
* [[mleN]]
+
* ''[[malR]]''
* [[yflS]]
+
* ''[[malS]]''
* [[yoaB]]
+
* ''[[mleA]]''
* [[yraO]]
+
* ''[[mleN]]''
* [[ytsJ]]
+
* ''[[scoA]]''
 +
* ''[[scoB]]''
 +
* ''[[ybaR]]''
 +
* ''[[yflS]]''
 +
* ''[[yoaB]]''
 +
* ''[[yraO]]''
 +
* ''[[ysbA]]''
 +
* ''[[ytsJ]]''
 +
* ''[[yxjF]]''
  
 
=== Utilization of acetoin ===  
 
=== Utilization of acetoin ===  
* [[acoA]]
+
* ''[[acoA]]''
* [[acoB]]
+
* ''[[acoB]]''
* [[acoC]]
+
* ''[[acoC]]''
* [[acoL]]
+
* ''[[acoL]]''
* [[acoR]]
+
* ''[[acoR]]''
* [[ytrA]]
 
* [[ytrB]]
 
* [[ytrC]]
 
* [[ytrD]]
 
* [[ytrE]]
 
* [[ytrF]]
 
  
 
=== Utilization of glycerol/ glycerol-3-phosphate ===  
 
=== Utilization of glycerol/ glycerol-3-phosphate ===  
* [[glpD]]
+
* ''[[glpD]]''
* [[glpF]]
+
* ''[[glpF]]''
* [[glpK]]
+
* ''[[glpK]]''
* [[glpP]]
+
* ''[[glpP]]''
* [[glpQ]]
+
* ''[[glpQ]]''
* [[glpT]]
+
* ''[[glpT]]''
  
 
=== Utilization of ribose ===  
 
=== Utilization of ribose ===  
* [[rbsA]]
+
* ''[[rbsA]]''
* [[rbsB]]
+
* ''[[rbsB]]''
* [[rbsC]]
+
* ''[[rbsC]]''
* [[rbsD]]
+
* ''[[rbsD]]''
* [[rbsK]]
+
* ''[[rbsK]]''
* [[rbsR]]
+
* ''[[rbsR]]''
  
 
=== Utilization of xylan/ xylose ===  
 
=== Utilization of xylan/ xylose ===  
* [[xylA]]
+
* ''[[araE]]''
* [[xylB]]
+
* ''[[xylA]]''
* [[xylR]]
+
* ''[[xylB]]''
* [[xynA]]
+
* ''[[xylR]]''
* [[xynB]]
+
* ''[[xynA]]''
* [[xynP]]
+
* ''[[xynB]]''
 +
* ''[[xynP]]''
  
 
=== Utilization of arabinan/ arabinose/ arabitol ===  
 
=== Utilization of arabinan/ arabinose/ arabitol ===  
* [[abf2]]
+
* ''[[abf2]]''
* [[abfA]]
+
* ''[[abfA]]''
* [[abn2]]
+
* ''[[abn2]]''
* [[abnA]]
+
* ''[[abnA]]''
* [[araA]]
+
*'' [[araA]]''
* [[araB]]
+
* ''[[araB]]''
* [[araD]]
+
* ''[[araD]]''
* [[araE]]
+
* ''[[araE]]''
* [[araN]]
+
* ''[[araN]]''
* [[araP]]
+
* ''[[araP]]''
* [[araQ]]
+
* ''[[araQ]]''
* [[araR]]
+
* ''[[araR]]''
* [[ytbE]]
 
  
 
=== Utilization of fructose ===  
 
=== Utilization of fructose ===  
* [[fruA]]
+
* ''[[fruA]]''
* [[fruK]]
+
* ''[[fruK]]''
* [[fruR]]
+
* ''[[fruR]]''
* [[levD]]
+
* ''[[levD]]''
* [[levE]]
+
* ''[[levE]]''
* [[levF]]
+
* ''[[levF]]''
* [[levG]]
+
* ''[[levG]]''
* [[levR]]
+
* ''[[levR]]''
  
 
=== Utilization of galactose ===  
 
=== Utilization of galactose ===  
* [[galE]]
+
* ''[[araE]]''
* [[galK]]
+
* ''[[galE]]''
* [[galM]]
+
* ''[[galK]]''
* [[galT]]
+
* ''[[galM]]''
 +
* ''[[galT]]''
  
 
=== Utilization of mannose ===  
 
=== Utilization of mannose ===  
* [[manA]]
+
* ''[[manA]]''
* [[manP]]
+
* ''[[manP]]''
* [[manR]]
+
* ''[[manR]]''
* [[pmi]]
+
* ''[[pmi]]''
  
 
=== Utilization of mannitol ===  
 
=== Utilization of mannitol ===  
* [[mtlA]]
+
* ''[[mtlA]]''
* [[mtlD]]
+
* ''[[mtlD]]''
* [[mtlF]]
+
* ''[[mtlF]]''
* [[mtlR]]
+
* ''[[mtlR]]''
  
 
=== Utilization of glucitol ===  
 
=== Utilization of glucitol ===  
* [[gutB]]
+
* ''[[gutB]]''
* [[gutP]]
+
* ''[[gutP]]''
* [[gutR]]
+
* ''[[gutR]]''
 
 
=== Utilization of rhamnose ===
 
* [[yulC]]
 
* [[yulE]]
 
  
 
=== Utilization of gluconate ===  
 
=== Utilization of gluconate ===  
* [[gntK]]
+
* ''[[gntK]]''
* [[gntP]]
+
* ''[[gntP]]''
* [[gntR]]
+
* ''[[gntR]]''
* [[gntZ]]
+
* ''[[gntZ]]''
  
 
=== Utilization of glucarate/galactarate ===  
 
=== Utilization of glucarate/galactarate ===  
* [[ycbC]]
+
* ''[[ycbC]]''
* [[ycbD]]
+
* ''[[ycbD]]''
* [[ycbE]]
+
* ''[[ycbE]]''
* [[ycbF]]
+
* ''[[ycbF]]''
* [[ycbG]]
+
* ''[[ycbG]]''
* [[ycbH]]
+
*'' [[ycbH]]''
  
 
=== Utilization of hexuronate  ===  
 
=== Utilization of hexuronate  ===  
* [[exuR]]
+
* ''[[exuR]]''
* [[exuT]]
+
* ''[[exuT]]''
* [[kdgA]]
+
* ''[[kdgA]]''
* [[kdgK]]
+
* ''[[kdgK]]''
* [[kdgR]]
+
* ''[[kdgR]]''
* [[kdgT]]
+
* ''[[kdgT]]''
* [[kduD]]
+
* ''[[kduD]]''
* [[kduI]]
+
* ''[[kduI]]''
* [[uxaA]]
+
* ''[[uxaA]]''
* [[uxaB]]
+
* ''[[uxaB]]''
* [[uxaC]]
+
* ''[[uxaC]]''
* [[uxuA]]
+
* ''[[uxuA]]''
* [[yjmB]]
+
* ''[[yjmB]]''
* [[yjmC]]
+
* ''[[yjmC]]''
* [[yjmD]]
+
* ''[[yjmD]]''
* [[yjmF]]
+
* ''[[yjmF]]''
  
 
=== Utilization of inositol ===  
 
=== Utilization of inositol ===  
* [[iolA]]
+
* ''[[iolA]]''
* [[iolB]]
+
* ''[[iolB]]''
* [[iolC]]
+
* ''[[iolC]]''
* [[iolD]]
+
* ''[[iolD]]''
* [[iolE]]
+
* ''[[iolE]]''
* [[iolF]]
+
* ''[[iolF]]''
* [[iolG]]
+
* ''[[iolG]]''
* [[iolH]]
+
* ''[[iolH]]''
* [[iolI]]
+
* ''[[iolI]]''
* [[iolJ]]
+
* ''[[iolJ]]''
* [[iolR]]
+
* ''[[iolR]]''
* [[iolS]]
+
* ''[[iolS]]''
* [[iolT]]
+
* ''[[iolT]]''
* [[iolW]]
+
* ''[[iolW]]''
* [[iolX]]
+
* ''[[iolX]]''
 +
* ''[[yfiG]]''
  
 
=== Utilization of amino sugars ===  
 
=== Utilization of amino sugars ===  
* [[gamA]]
+
* ''[[frlB]]''
* [[gamP]]
+
* ''[[frlD]]''
* [[murP]]
+
* ''[[frlM]]''
* [[murQ]]
+
* ''[[frlN]]''
* [[murR]]
+
*'' [[frlO]]''
* [[nagA]]
+
* ''[[frlR]]''
* [[nagB]]
+
* ''[[gamA]]''
* [[nagP]]
+
* ''[[gamP]]''
* [[ybgA]]
+
* ''[[gamR]]''
* [[yurJ]]
+
* ''[[murP]]''
* [[yurK]]
+
* ''[[murQ]]''
* [[yurL]]
+
* ''[[murR]]''
* [[yurM]]
+
* ''[[nagA]]''
* [[yurN]]
+
* ''[[nagB]]''
* [[yurO]]
+
* ''[[nagP]]''
* [[yurP]]
+
* ''[[nagR]]''
* [[yvoA]]
+
* ''[[yurJ]]''
  
 
=== Utilization of beta-glucosides ===  
 
=== Utilization of beta-glucosides ===  
* [[bglA]]
+
* ''[[bglA]]''
* [[bglH]]
+
* ''[[bglH]]''
* [[bglP]]
+
* ''[[bglP]]''
* [[licT]]
+
* ''[[licT]]''
* [[yckE]]
+
* ''[[yckE]]''
  
 
=== Utilization of sucrose ===  
 
=== Utilization of sucrose ===  
* [[fruC]]
+
* ''[[fruC]]''
* [[fruC]]
+
* ''[[sacA]]''
* [[sacA]]
+
* ''[[sacB]]''
* [[sacB]]
+
* ''[[sacP]]''
* [[sacP]]
+
* ''[[sacT]]''
* [[sacT]]
+
* ''[[sacX]]''
* [[sacX]]
+
* ''[[sacY]]''
* [[sacY]]
 
  
 
=== Utilization of trehalose ===  
 
=== Utilization of trehalose ===  
* [[glcK]]
+
* ''[[glcK]]''
* [[treA]]
+
* ''[[treA]]''
* [[treP]]
+
* ''[[treP]]''
* [[treR]]
+
* ''[[treR]]''
  
 
=== Utilization of melibiose ===  
 
=== Utilization of melibiose ===  
* [[amyC]]
+
* ''[[amyC]]''
* [[amyD]]
+
* ''[[amyD]]''
* [[melA]]
+
* ''[[melA]]''
* [[msmE]]
+
* ''[[msmE]]''
* [[msmR]]
+
* ''[[msmR]]''
* [[msmX]]
+
* ''[[msmX]]''
  
 
=== Utilization of maltose ===  
 
=== Utilization of maltose ===  
* [[glcK]]
+
* ''[[glcK]]''
* [[glvR]]
+
*'' [[glvR]]''
* [[malA]]
+
* ''[[malA]]''
* [[malP]]
+
* ''[[malP]]''
* [[yvdK]]
+
* ''[[yvdK]]''
  
 
=== Utilization of starch/ maltodextrin ===  
 
=== Utilization of starch/ maltodextrin ===  
* [[amyE]]
+
* ''[[amyE]]''
* [[amyX]]
+
* ''[[amyX]]''
* [[glcK]]
+
* ''[[glcK]]''
* [[maa]]
+
* ''[[maa]]''
* [[maa]]
+
* ''[[malL]]''
* [[malL]]
+
* ''[[mdxE]]''
* [[malL]]
+
* ''[[mdxF]]''
* [[mdxE]]
+
* ''[[mdxG]]''
* [[mdxF]]
+
* ''[[msmX]]''
* [[mdxG]]
+
* ''[[pgcM]]''
* [[msmX]]
+
* ''[[yvdE]]''
* [[pgcM]]
+
* ''[[yvdF]]''
* [[yvdE]]
 
* [[yvdF]]
 
* [[yvdF]]
 
  
 
=== Utilization of glucomannan ===  
 
=== Utilization of glucomannan ===  
* [[gmuA]]
+
* ''[[gmuA]]''
* [[gmuB]]
+
* ''[[gmuB]]''
* [[gmuC]]
+
* ''[[gmuC]]''
* [[gmuD]]
+
* ''[[gmuD]]''
* [[gmuE]]
+
* ''[[gmuE]]''
* [[gmuF]]
+
* ''[[gmuF]]''
* [[gmuG]]
+
* ''[[gmuG]]''
* [[gmuR]]
+
* ''[[gmuR]]''
 +
 
 +
=== Utilization of rhamnose and pectin ===
 +
* ''[[lplD]]''
 +
* ''[[rhaA]]''
 +
* ''[[rhaB]]''
 +
* ''[[rhaEW]]''
 +
* ''[[rhaM]]''
 +
* ''[[rhaR]]''
 +
* ''[[rhiF]]''
 +
* ''[[rhiG]]''
 +
* ''[[rhiL]]''
 +
* ''[[rhiN]]''
 +
* ''[[rhgR]]''
 +
* ''[[ybcM]]''
 +
* ''[[yesT]]''
 +
* ''[[yesV]]''
 +
* ''[[yesW]]''
 +
* ''[[yesX]]''
 +
* ''[[yesY]]''
 +
* ''[[yesZ]]''
 +
* ''[[yteR]]''
  
=== Utilization of pectin ===  
+
=== Utilization of galactan ===  
* [[ybcM]]
+
* ''[[cycB]]''
* [[yesO]]
+
* ''[[ganA]]''
* [[yesP]]
+
* ''[[ganB]]''
* [[yesQ]]
+
*'' [[ganP]]''
* [[yesR]]
+
* ''[[ganQ]]''
* [[yesS]]
+
* ''[[lacR]]''
* [[yesT]]
 
* [[yesV]]
 
* [[yesW]]
 
* [[yesX]]
 
* [[yesY]]
 
* [[yesZ]]
 
* [[yteR]]
 
  
 
=== Utilization of other polymeric carbohydrates ===  
 
=== Utilization of other polymeric carbohydrates ===  
* [[bglC]]
+
* ''[[bglC]]''
* [[bglS]]
+
* ''[[bglS]]''
* [[csn]]
+
* ''[[csn]]''
* [[cycB]]
+
* ''[[levB]]''
* [[lacA]]
+
* ''[[levD]]''
* [[lacR]]
+
* ''[[levE]]''
* [[levB]]
+
* ''[[levF]]''
* [[levD]]
+
* ''[[levG]]''
* [[levE]]
+
* ''[[levR]]''
* [[levF]]
+
* ''[[licA]]''
* [[levG]]
+
* ''[[licB]]''
* [[levR]]
+
* ''[[licC]]''
* [[licA]]
+
* ''[[licH]]''
* [[licB]]
+
* ''[[licR]]''
* [[licC]]
+
* ''[[licT]]''
* [[licH]]
+
* ''[[pel]]''
* [[licR]]
+
* ''[[pelB]]''
* [[licT]]
+
* ''[[pelC]]''
* [[pel]]
+
* ''[[sacC]]''
* [[pelB]]
+
* ''[[senS]]''
* [[pelC]]
+
* ''[[xynC]]''
* [[sacC]]
+
* ''[[xynD]]''
* [[senS]]
+
* ''[[ysdC]]''
* [[xynC]]
+
* ''[[ytoP]]''
* [[xynD]]
+
* ''[[yugT]]''
* [[ysdC]]
+
 
* [[ytoP]]
+
=== Utilization of other pentoses and hexoses===
* [[yugT]]
+
* ''[[ydaE]]''
* [[yvfL]]
+
 
* [[yvfM]]
+
== Utilization of specific carbon sources in [http://subtiwiki.uni-goettingen.de/subtipathways.html ''Subti''Pathways]: [http://subtiwiki.uni-goettingen.de/pathways/carbohydrate_metabolic_pathways.html Utilization of different carbon sources]==
* [[yvfO]]
 
  
 
==Reviews==
 
==Reviews==
<pubmed> 11018147 19202299 </pubmed>
+
<pubmed> 11018147 19202299 17982469 </pubmed>
 +
=Back to [[categories]]=

Latest revision as of 16:52, 26 September 2016

Parent categories
Neighbouring categories
Related categories

Genes in this functional category

Utilization of organic acids

Utilization of acetoin

Utilization of glycerol/ glycerol-3-phosphate

Utilization of ribose

Utilization of xylan/ xylose

Utilization of arabinan/ arabinose/ arabitol

Utilization of fructose

Utilization of galactose

Utilization of mannose

Utilization of mannitol

Utilization of glucitol

Utilization of gluconate

Utilization of glucarate/galactarate

Utilization of hexuronate

Utilization of inositol

Utilization of amino sugars

Utilization of beta-glucosides

Utilization of sucrose

Utilization of trehalose

Utilization of melibiose

Utilization of maltose

Utilization of starch/ maltodextrin

Utilization of glucomannan

Utilization of rhamnose and pectin

Utilization of galactan

Utilization of other polymeric carbohydrates

Utilization of other pentoses and hexoses

Utilization of specific carbon sources in SubtiPathways: Utilization of different carbon sources

Reviews

Yasutaro Fujita
Carbon catabolite control of the metabolic network in Bacillus subtilis.
Biosci Biotechnol Biochem: 2009, 73(2);245-59
[PubMed:19202299] [WorldCat.org] [DOI] (I p)

Abraham L Sonenshein
Control of key metabolic intersections in Bacillus subtilis.
Nat Rev Microbiol: 2007, 5(12);917-27
[PubMed:17982469] [WorldCat.org] [DOI] (I p)

J Stülke, W Hillen
Regulation of carbon catabolism in Bacillus species.
Annu Rev Microbiol: 2000, 54;849-80
[PubMed:11018147] [WorldCat.org] [DOI] (P p)

Back to categories