Difference between revisions of "Utilization of specific carbon sources"

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(Created page with " {{CategoryTree |Parents= * 2. Metabolism ** 2.2. Carbon metabolism |Neighbours= * 2.2.1. Carbon core metabolism * 2.2.2. Utilization of specific carbon sources |...")
 
(→‎Utilization of organic acids)
 
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{{CategoryTree
 
{{CategoryTree
 
|Parents=
 
|Parents=
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* 2.2.2. [[Utilization of specific carbon sources]]
 
* 2.2.2. [[Utilization of specific carbon sources]]
 
|Related=
 
|Related=
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none
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* [[CcpA regulon]]
 
|}}
 
|}}
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== Genes in this functional category ==
 +
 +
=== Utilization of organic acids ===
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* ''[[acsA]]''
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* ''[[acuA]]''
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* ''[[acuC]]''
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* ''[[cimH]]''
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* ''[[citH]]''
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* ''[[citM]]''
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* ''[[citS]]''
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* ''[[citT]]''
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* ''[[dctB]]''
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* ''[[dctP]]''
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* ''[[dctR]]''
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* ''[[dctS]]''
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* ''[[hbuT]]''
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* ''[[lutA]]''
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* ''[[lutB]]''
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* ''[[lutC]]''
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* ''[[lutP]]''
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* ''[[lutR]]''
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*'' [[lytS]]''
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* ''[[lytT]]''
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* ''[[maeA]]''
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* ''[[maeN]]''
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* ''[[malK]]''
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* ''[[malR]]''
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* ''[[malS]]''
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* ''[[mleA]]''
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* ''[[mleN]]''
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* ''[[scoA]]''
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* ''[[scoB]]''
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* ''[[ybaR]]''
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* ''[[yflS]]''
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* ''[[yoaB]]''
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* ''[[yraO]]''
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* ''[[ysbA]]''
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* ''[[ytsJ]]''
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* ''[[yxjF]]''
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=== Utilization of acetoin ===
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* ''[[acoA]]''
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* ''[[acoB]]''
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* ''[[acoC]]''
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* ''[[acoL]]''
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* ''[[acoR]]''
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=== Utilization of glycerol/ glycerol-3-phosphate ===
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* ''[[glpD]]''
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* ''[[glpF]]''
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* ''[[glpK]]''
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* ''[[glpP]]''
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* ''[[glpQ]]''
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* ''[[glpT]]''
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 +
=== Utilization of ribose ===
 +
* ''[[rbsA]]''
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* ''[[rbsB]]''
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* ''[[rbsC]]''
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* ''[[rbsD]]''
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* ''[[rbsK]]''
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* ''[[rbsR]]''
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 +
=== Utilization of xylan/ xylose ===
 +
* ''[[araE]]''
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* ''[[xylA]]''
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* ''[[xylB]]''
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* ''[[xylR]]''
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* ''[[xynA]]''
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* ''[[xynB]]''
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* ''[[xynP]]''
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=== Utilization of arabinan/ arabinose/ arabitol ===
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* ''[[abf2]]''
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* ''[[abfA]]''
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* ''[[abn2]]''
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* ''[[abnA]]''
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*'' [[araA]]''
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* ''[[araB]]''
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* ''[[araD]]''
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* ''[[araE]]''
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* ''[[araN]]''
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* ''[[araP]]''
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* ''[[araQ]]''
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* ''[[araR]]''
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=== Utilization of fructose ===
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* ''[[fruA]]''
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* ''[[fruK]]''
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* ''[[fruR]]''
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* ''[[levD]]''
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* ''[[levE]]''
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* ''[[levF]]''
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* ''[[levG]]''
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* ''[[levR]]''
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 +
=== Utilization of galactose ===
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* ''[[araE]]''
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* ''[[galE]]''
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* ''[[galK]]''
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* ''[[galM]]''
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* ''[[galT]]''
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 +
=== Utilization of mannose ===
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* ''[[manA]]''
 +
* ''[[manP]]''
 +
* ''[[manR]]''
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* ''[[pmi]]''
 +
 +
=== Utilization of mannitol ===
 +
* ''[[mtlA]]''
 +
* ''[[mtlD]]''
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* ''[[mtlF]]''
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* ''[[mtlR]]''
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 +
=== Utilization of glucitol ===
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* ''[[gutB]]''
 +
* ''[[gutP]]''
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* ''[[gutR]]''
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 +
=== Utilization of gluconate ===
 +
* ''[[gntK]]''
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* ''[[gntP]]''
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* ''[[gntR]]''
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* ''[[gntZ]]''
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 +
=== Utilization of glucarate/galactarate ===
 +
* ''[[ycbC]]''
 +
* ''[[ycbD]]''
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* ''[[ycbE]]''
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* ''[[ycbF]]''
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* ''[[ycbG]]''
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*'' [[ycbH]]''
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 +
=== Utilization of hexuronate  ===
 +
* ''[[exuR]]''
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* ''[[exuT]]''
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* ''[[kdgA]]''
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* ''[[kdgK]]''
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* ''[[kdgR]]''
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* ''[[kdgT]]''
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* ''[[kduD]]''
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* ''[[kduI]]''
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* ''[[uxaA]]''
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* ''[[uxaB]]''
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* ''[[uxaC]]''
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* ''[[uxuA]]''
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* ''[[yjmB]]''
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* ''[[yjmC]]''
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* ''[[yjmD]]''
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* ''[[yjmF]]''
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=== Utilization of inositol ===
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* ''[[iolA]]''
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* ''[[iolB]]''
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* ''[[iolC]]''
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* ''[[iolD]]''
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* ''[[iolE]]''
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* ''[[iolF]]''
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* ''[[iolG]]''
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* ''[[iolH]]''
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* ''[[iolI]]''
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* ''[[iolJ]]''
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* ''[[iolR]]''
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* ''[[iolS]]''
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* ''[[iolT]]''
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* ''[[iolW]]''
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* ''[[iolX]]''
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* ''[[yfiG]]''
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=== Utilization of amino sugars ===
 +
* ''[[frlB]]''
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* ''[[frlD]]''
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* ''[[frlM]]''
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* ''[[frlN]]''
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*'' [[frlO]]''
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* ''[[frlR]]''
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* ''[[gamA]]''
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* ''[[gamP]]''
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* ''[[gamR]]''
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* ''[[murP]]''
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* ''[[murQ]]''
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* ''[[murR]]''
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* ''[[nagA]]''
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* ''[[nagB]]''
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* ''[[nagP]]''
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* ''[[nagR]]''
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* ''[[yurJ]]''
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=== Utilization of beta-glucosides ===
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* ''[[bglA]]''
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* ''[[bglH]]''
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* ''[[bglP]]''
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* ''[[licT]]''
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* ''[[yckE]]''
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=== Utilization of sucrose ===
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* ''[[fruC]]''
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* ''[[sacA]]''
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* ''[[sacB]]''
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* ''[[sacP]]''
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* ''[[sacT]]''
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* ''[[sacX]]''
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* ''[[sacY]]''
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=== Utilization of trehalose ===
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* ''[[glcK]]''
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* ''[[treA]]''
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* ''[[treP]]''
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* ''[[treR]]''
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=== Utilization of melibiose ===
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* ''[[amyC]]''
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* ''[[amyD]]''
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* ''[[melA]]''
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* ''[[msmE]]''
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* ''[[msmR]]''
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* ''[[msmX]]''
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=== Utilization of maltose ===
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* ''[[glcK]]''
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*'' [[glvR]]''
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* ''[[malA]]''
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* ''[[malP]]''
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* ''[[yvdK]]''
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=== Utilization of starch/ maltodextrin ===
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* ''[[amyE]]''
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* ''[[amyX]]''
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* ''[[glcK]]''
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* ''[[maa]]''
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* ''[[malL]]''
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* ''[[mdxE]]''
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* ''[[mdxF]]''
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* ''[[mdxG]]''
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* ''[[msmX]]''
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* ''[[pgcM]]''
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* ''[[yvdE]]''
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* ''[[yvdF]]''
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=== Utilization of glucomannan ===
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* ''[[gmuA]]''
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* ''[[gmuB]]''
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* ''[[gmuC]]''
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* ''[[gmuD]]''
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* ''[[gmuE]]''
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* ''[[gmuF]]''
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* ''[[gmuG]]''
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* ''[[gmuR]]''
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=== Utilization of rhamnose and pectin ===
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* ''[[lplD]]''
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* ''[[rhaA]]''
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* ''[[rhaB]]''
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* ''[[rhaEW]]''
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* ''[[rhaM]]''
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* ''[[rhaR]]''
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* ''[[rhiF]]''
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* ''[[rhiG]]''
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* ''[[rhiL]]''
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* ''[[rhiN]]''
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* ''[[rhgR]]''
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* ''[[ybcM]]''
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* ''[[yesT]]''
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* ''[[yesV]]''
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* ''[[yesW]]''
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* ''[[yesX]]''
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* ''[[yesY]]''
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* ''[[yesZ]]''
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* ''[[yteR]]''
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=== Utilization of galactan ===
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* ''[[cycB]]''
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* ''[[ganA]]''
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* ''[[ganB]]''
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*'' [[ganP]]''
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* ''[[ganQ]]''
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* ''[[lacR]]''
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=== Utilization of other polymeric carbohydrates ===
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* ''[[bglC]]''
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* ''[[bglS]]''
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* ''[[csn]]''
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* ''[[levB]]''
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* ''[[levD]]''
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* ''[[levE]]''
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* ''[[levF]]''
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* ''[[levG]]''
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* ''[[levR]]''
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* ''[[licA]]''
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* ''[[licB]]''
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* ''[[licC]]''
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* ''[[licH]]''
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* ''[[licR]]''
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* ''[[licT]]''
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* ''[[pel]]''
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* ''[[pelB]]''
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* ''[[pelC]]''
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* ''[[sacC]]''
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* ''[[senS]]''
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* ''[[xynC]]''
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* ''[[xynD]]''
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* ''[[ysdC]]''
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* ''[[ytoP]]''
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* ''[[yugT]]''
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=== Utilization of other pentoses and hexoses===
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* ''[[ydaE]]''
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== Utilization of specific carbon sources in [http://subtiwiki.uni-goettingen.de/subtipathways.html ''Subti''Pathways]: [http://subtiwiki.uni-goettingen.de/pathways/carbohydrate_metabolic_pathways.html Utilization of different carbon sources]==
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==Reviews==
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<pubmed> 11018147 19202299 17982469 </pubmed>
 +
=Back to [[categories]]=

Latest revision as of 16:52, 26 September 2016

Parent categories
Neighbouring categories
Related categories

Genes in this functional category

Utilization of organic acids

Utilization of acetoin

Utilization of glycerol/ glycerol-3-phosphate

Utilization of ribose

Utilization of xylan/ xylose

Utilization of arabinan/ arabinose/ arabitol

Utilization of fructose

Utilization of galactose

Utilization of mannose

Utilization of mannitol

Utilization of glucitol

Utilization of gluconate

Utilization of glucarate/galactarate

Utilization of hexuronate

Utilization of inositol

Utilization of amino sugars

Utilization of beta-glucosides

Utilization of sucrose

Utilization of trehalose

Utilization of melibiose

Utilization of maltose

Utilization of starch/ maltodextrin

Utilization of glucomannan

Utilization of rhamnose and pectin

Utilization of galactan

Utilization of other polymeric carbohydrates

Utilization of other pentoses and hexoses

Utilization of specific carbon sources in SubtiPathways: Utilization of different carbon sources

Reviews

Yasutaro Fujita
Carbon catabolite control of the metabolic network in Bacillus subtilis.
Biosci Biotechnol Biochem: 2009, 73(2);245-59
[PubMed:19202299] [WorldCat.org] [DOI] (I p)

Abraham L Sonenshein
Control of key metabolic intersections in Bacillus subtilis.
Nat Rev Microbiol: 2007, 5(12);917-27
[PubMed:17982469] [WorldCat.org] [DOI] (I p)

J Stülke, W Hillen
Regulation of carbon catabolism in Bacillus species.
Annu Rev Microbiol: 2000, 54;849-80
[PubMed:11018147] [WorldCat.org] [DOI] (P p)

Back to categories

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