Transcription

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SubtiExpress - A database integrating gene expression of all genes under 104 conditions

Genes in this functional category

RNA polymerase

Sigma factors

  • SigA: housekeeping sigma factor
  • SigB: general stress sigma factor
  • SigD: sigma factor for chemotaxis and motility genes
  • SigE: early mother cell-specific sporulation sigma factor
  • SigF: early forespore-specific sporulation sigma factor
  • SigG: late forespore-specific sporulation sigma factor
  • SigH: sigma factor that controls genes of the transition phase
  • SigI:
  • SigK: late mother cell-specific sporulation sigma factor
  • SigL: enhancer-dependent sigma factor (Sigma-54 family)
  • SigM: ECF sigma factor, controls genes required at high salt concentrations
  • SigV: ECF sigma factor
  • SigW: ECF sigma factor, mediates the transcriptional response to cell wall stress PubMed
  • SigX: ECF sigma factor
  • SigY: ECF sigma factor
  • SigZ: ECF sigma factor
  • Xpf
  • YlaC
  • YvrI-YvrH: (composite sigma factor)

Transcription elongation/ termination

Important publications

Evert-Jan Blom, Anja N J A Ridder, Andrzej T Lulko, Jos B T M Roerdink, Oscar P Kuipers
Time-resolved transcriptomics and bioinformatic analyses reveal intrinsic stress responses during batch culture of Bacillus subtilis.
PLoS One: 2011, 6(11);e27160
[PubMed:22087258] [WorldCat.org] [DOI] (I p)

Houra Merrikh, Cristina Machón, William H Grainger, Alan D Grossman, Panos Soultanas
Co-directional replication-transcription conflicts lead to replication restart.
Nature: 2011, 470(7335);554-7
[PubMed:21350489] [WorldCat.org] [DOI] (I p)

Reviews


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