Transcription

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Genes in this functional category

RNA polymerase

Sigma factors

  • SigA: housekeeping sigma factor
  • SigB: general stress sigma factor
  • SigD: sigma factor for chemotaxis and motility genes
  • SigE: early mother cell-specific sporulation sigma factor
  • SigF: early forespore-specific sporulation sigma factor
  • SigG: late forespore-specific sporulation sigma factor
  • SigH: sigma factor that controls genes of the transition phase
  • SigI:
  • SigK: late mother cell-specific sporulation sigma factor
  • SigL: enhancer-dependent sigma factor (Sigma-54 family)
  • SigM: ECF sigma factor, controls genes required at high salt concentrations
  • SigV: ECF sigma factor
  • SigW: ECF sigma factor, mediates the transcriptional response to cell wall stress PubMed
  • SigX: ECF sigma factor
  • SigY: ECF sigma factor
  • SigZ: ECF sigma factor
  • Xpf
  • YlaC
  • YvrI-YvrH: (composite sigma factor)

Transcription elongation/ termination

A database for the time-resolved expression of all B. subtilis genes

Important publications

Evert-Jan Blom, Anja N J A Ridder, Andrzej T Lulko, Jos B T M Roerdink, Oscar P Kuipers
Time-resolved transcriptomics and bioinformatic analyses reveal intrinsic stress responses during batch culture of Bacillus subtilis.
PLoS One: 2011, 6(11);e27160
[PubMed:22087258] [WorldCat.org] [DOI] (I p)

Houra Merrikh, Cristina Machón, William H Grainger, Alan D Grossman, Panos Soultanas
Co-directional replication-transcription conflicts lead to replication restart.
Nature: 2011, 470(7335);554-7
[PubMed:21350489] [WorldCat.org] [DOI] (I p)

Reviews

Lakshminarayan M Iyer, L Aravind
Insights from the architecture of the bacterial transcription apparatus.
J Struct Biol: 2012, 179(3);299-319
[PubMed:22210308] [WorldCat.org] [DOI] (I p)

Thomas J Santangelo, Irina Artsimovitch
Termination and antitermination: RNA polymerase runs a stop sign.
Nat Rev Microbiol: 2011, 9(5);319-29
[PubMed:21478900] [WorldCat.org] [DOI] (I p)

Evgeny Nudler
RNA polymerase active center: the molecular engine of transcription.
Annu Rev Biochem: 2009, 78;335-61
[PubMed:19489723] [WorldCat.org] [DOI] (I p)

P J Lewis, G P Doherty, J Clarke
Transcription factor dynamics.
Microbiology (Reading): 2008, 154(Pt 7);1837-1844
[PubMed:18599813] [WorldCat.org] [DOI] (P p)

Tanja M Gruber, Carol A Gross
Multiple sigma subunits and the partitioning of bacterial transcription space.
Annu Rev Microbiol: 2003, 57;441-66
[PubMed:14527287] [WorldCat.org] [DOI] (P p)

Sergei Borukhov, Konstantin Severinov
Role of the RNA polymerase sigma subunit in transcription initiation.
Res Microbiol: 2002, 153(9);557-62
[PubMed:12455702] [WorldCat.org] [DOI] (P p)

Paul Gollnick, Paul Babitzke
Transcription attenuation.
Biochim Biophys Acta: 2002, 1577(2);240-50
[PubMed:12213655] [WorldCat.org] [DOI] (P p)

John D Helmann
The extracytoplasmic function (ECF) sigma factors.
Adv Microb Physiol: 2002, 46;47-110
[PubMed:12073657] [WorldCat.org] [DOI] (P p)

E Nudler
Transcription elongation: structural basis and mechanisms.
J Mol Biol: 1999, 288(1);1-12
[PubMed:10329121] [WorldCat.org] [DOI] (P p)

W G Haldenwang
The sigma factors of Bacillus subtilis.
Microbiol Rev: 1995, 59(1);1-30
[PubMed:7708009] [WorldCat.org] [DOI] (P p)


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