Difference between revisions of "Transcription"

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* 3.2.4. [[RNases]]
 
* 3.2.4. [[RNases]]
 
|Related=
 
|Related=
none
+
* [[Transcription factors and their control]]
 +
* [[sigma factors]]
 +
* [[RNA polymerase]]
 +
* [[genome-wide analyses]]
 
|}}
 
|}}
 
__TOC__
 
__TOC__
 
<br><br><br><br><br>
 
<br><br><br><br><br>
  
==Reviews==
+
== [http://cellpublisher.gobics.de/subtiexpress/ SubtiExpress] - A database integrating gene expression of all genes under 104 conditions ==
<pubmed>18599813 14527287 12455702 12213655 12073657 7708009 </pubmed>
 
  
 
== Genes in this functional category ==
 
== Genes in this functional category ==
  
=== Rna polymerase ===  
+
=== [[RNA polymerase]] ===  
 
* ''[[rpoA]]''
 
* ''[[rpoA]]''
 
* ''[[rpoB]]''
 
* ''[[rpoB]]''
 
* ''[[rpoC]]''
 
* ''[[rpoC]]''
 
* ''[[rpoE]]''
 
* ''[[rpoE]]''
* ''[[ykzG]]''
+
* ''[[rpoY]]''
 
* ''[[yloH]]''
 
* ''[[yloH]]''
  
=== Sigma factors ===  
+
=== [[Sigma factors]] ===  
* ''[[sigA]]''
+
:*[[SigA]]: housekeeping sigma factor 
* ''[[sigB]]''
+
:*[[SigB]]: general stress sigma factor
* ''[[sigD]]''
+
:*[[SigD]]: sigma factor for chemotaxis and motility genes
* ''[[sigE]]''
+
:*[[SigE]]: early mother cell-specific sporulation sigma factor
* ''[[sigF]]''
+
:*[[SigF]]: early forespore-specific sporulation sigma factor
* ''[[sigG]]''
+
:*[[SigG]]: late forespore-specific sporulation sigma factor
* ''[[sigH]]''
+
:*[[SigH]]: sigma factor that controls genes of the transition phase
* ''[[sigI]]''
+
:*[[SigI]]:
* ''[[sigL]]''
+
:*[[SigK]]: late mother cell-specific sporulation sigma factor
* ''[[sigM]]''
+
:*[[SigL]]: enhancer-dependent sigma factor (Sigma-54 family)
* ''[[sigV]]''
+
:*[[SigM]]: ECF sigma factor, controls genes required at high salt concentrations
* ''[[sigW]]''
+
:*[[SigV]]: ECF sigma factor
* ''[[sigX]]''
+
:*[[SigW]]: ECF sigma factor, mediates the transcriptional response to cell wall stress {{PubMed|12207695}}
* ''[[sigY]]''
+
:*[[SigX]]: ECF sigma factor
* ''[[sigZ]]''
+
:*[[SigY]]: ECF sigma factor
* ''[[spoIIIC]]''
+
:*[[SigZ]]: ECF sigma factor
* ''[[spoIVCB]]''
+
:*[[Xpf]]
* ''[[xpf]]''
+
:*[[YlaC]]
* ''[[ylaC]]''
+
:*[[SigO]]-[[RsoA]]: (composite sigma factor)
* ''[[yvrHa]]''
 
* ''[[yvrI]]''
 
  
 
=== Transcription elongation/ termination ===  
 
=== Transcription elongation/ termination ===  
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* ''[[nusG]]''
 
* ''[[nusG]]''
 
* ''[[rho]]''
 
* ''[[rho]]''
 +
 +
==Important publications==
 +
<pubmed> 21350489 22087258 22383849 24789973 27195891 28723971</pubmed>
 +
 +
==Reviews==
 +
<pubmed>18599813 14527287 12455702 12213655 12073657 7708009 19489723 10329121 21478900 22210308 24237659 26132790,29856930</pubmed>
 +
 +
=Back to [[categories]]=

Latest revision as of 11:10, 4 June 2018

Parent categories
Neighbouring categories
Related categories






SubtiExpress - A database integrating gene expression of all genes under 104 conditions

Genes in this functional category

RNA polymerase

Sigma factors

  • SigA: housekeeping sigma factor
  • SigB: general stress sigma factor
  • SigD: sigma factor for chemotaxis and motility genes
  • SigE: early mother cell-specific sporulation sigma factor
  • SigF: early forespore-specific sporulation sigma factor
  • SigG: late forespore-specific sporulation sigma factor
  • SigH: sigma factor that controls genes of the transition phase
  • SigI:
  • SigK: late mother cell-specific sporulation sigma factor
  • SigL: enhancer-dependent sigma factor (Sigma-54 family)
  • SigM: ECF sigma factor, controls genes required at high salt concentrations
  • SigV: ECF sigma factor
  • SigW: ECF sigma factor, mediates the transcriptional response to cell wall stress PubMed
  • SigX: ECF sigma factor
  • SigY: ECF sigma factor
  • SigZ: ECF sigma factor
  • Xpf
  • YlaC
  • SigO-RsoA: (composite sigma factor)

Transcription elongation/ termination

Important publications


Reviews

Kevin S Lang, Houra Merrikh
The Clash of Macromolecular Titans: Replication-Transcription Conflicts in Bacteria.
Annu Rev Microbiol: 2018, 72;71-88
[PubMed:29856930] [WorldCat.org] [DOI] (I p)

Georgiy A Belogurov, Irina Artsimovitch
Regulation of Transcript Elongation.
Annu Rev Microbiol: 2015, 69;49-69
[PubMed:26132790] [WorldCat.org] [DOI] (I p)

Julio A Freyre-González, Alejandra M Manjarrez-Casas, Enrique Merino, Mario Martinez-Nuñez, Ernesto Perez-Rueda, Rosa-María Gutiérrez-Ríos
Lessons from the modular organization of the transcriptional regulatory network of Bacillus subtilis.
BMC Syst Biol: 2013, 7;127
[PubMed:24237659] [WorldCat.org] [DOI] (I e)

Lakshminarayan M Iyer, L Aravind
Insights from the architecture of the bacterial transcription apparatus.
J Struct Biol: 2012, 179(3);299-319
[PubMed:22210308] [WorldCat.org] [DOI] (I p)

Thomas J Santangelo, Irina Artsimovitch
Termination and antitermination: RNA polymerase runs a stop sign.
Nat Rev Microbiol: 2011, 9(5);319-29
[PubMed:21478900] [WorldCat.org] [DOI] (I p)

Evgeny Nudler
RNA polymerase active center: the molecular engine of transcription.
Annu Rev Biochem: 2009, 78;335-61
[PubMed:19489723] [WorldCat.org] [DOI] (I p)

P J Lewis, G P Doherty, J Clarke
Transcription factor dynamics.
Microbiology (Reading): 2008, 154(Pt 7);1837-1844
[PubMed:18599813] [WorldCat.org] [DOI] (P p)

Tanja M Gruber, Carol A Gross
Multiple sigma subunits and the partitioning of bacterial transcription space.
Annu Rev Microbiol: 2003, 57;441-66
[PubMed:14527287] [WorldCat.org] [DOI] (P p)

Sergei Borukhov, Konstantin Severinov
Role of the RNA polymerase sigma subunit in transcription initiation.
Res Microbiol: 2002, 153(9);557-62
[PubMed:12455702] [WorldCat.org] [DOI] (P p)

Paul Gollnick, Paul Babitzke
Transcription attenuation.
Biochim Biophys Acta: 2002, 1577(2);240-50
[PubMed:12213655] [WorldCat.org] [DOI] (P p)

John D Helmann
The extracytoplasmic function (ECF) sigma factors.
Adv Microb Physiol: 2002, 46;47-110
[PubMed:12073657] [WorldCat.org] [DOI] (P p)

E Nudler
Transcription elongation: structural basis and mechanisms.
J Mol Biol: 1999, 288(1);1-12
[PubMed:10329121] [WorldCat.org] [DOI] (P p)

W G Haldenwang
The sigma factors of Bacillus subtilis.
Microbiol Rev: 1995, 59(1);1-30
[PubMed:7708009] [WorldCat.org] [DOI] (P p)


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