Talk:SubtiPathways

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Revision as of 14:44, 8 March 2010 by Aschmei (talk | contribs) (Stress response)
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Discovered something unusual in the diagrams? Please leave a comment in the corresponding section!

General comments about all diagrams

  • There seem to be some compatibility problems using Google Chrome. Nonetheless, Mozilla Firefox, Netscape, Microsoft Explorer, Safari, and Opera are working properly.
  • Comments in brackets have been changed in the original files, but have not been uploaded yet.


Carbon metabolism

Central carbon metabolism

  • write comments here

Utilization of different carbon sources

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Nitrogen and amino acid metabolism

Ammonium assimilation and glutamate metabolism (incl. glutamine and arginine)

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Alanine, glycine, serine

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Aspartate, asparagine

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Cysteine, methionine

  • Repel: Eventuell Einbindung von Extramarkern für die S-Box (bzw. alle riboswitches)???? Es gibt ja dafür extra Seiten im Subtiwiki. Sollte man aber erst mal mit Lope und Arne diskutieren (Jörg)
  • Cystin-Aufnahme-Systeme mit aufnehmen: TcyP, TcyABC, TcyJKLMN (Jörg)

Histidine

  • write comments here

Isoleucine, valine, leucine

  • Isoleucin-Abbau: Bcd und YwaA sind zwei unterschiedliche Reaktionen, Bcd geht mit NAD, nicht mit 2-KG (Jörg)

Lysine, threonine

  • write comments here

Phenylalanine, tyrosine, tryptophan

  • Reaktionen Chorismat ---> Folat --> jetzt vielleicht Verlinkung zu den entsprechenden Diagrammen?

Proline

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Lipid metabolism

Fatty acid and phospholipid biosynthesis

  • The structure of PDGP is wrong (although the name, CDP-diacylglycerol, seems right). Wrong PubChem ID?
  • The same applies for phosphatidylglycerol, L-serine, and others.

Fatty acid degradation

Nucleotides

Gene regulation of nucleotides

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Nucleosides catabolism

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Purine metabolism

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Purine catabolism

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Purine salvage pathways

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Pyrimidine metabolism

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Metabolism of cofactors

CoA synthesis

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Folate biosynthesis

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Menaquinone

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Riboflavin and FAD synthesis

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Thiamin synthesis

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Other pathways

Cellwall

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Stress response

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Phosphorelay

Sulfate assimilation

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tRNA charging

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Biofilm formation