Difference between revisions of "SwrC"

From SubtiWiki
Jump to: navigation, search
(Blanked the page)
Line 1: Line 1:
 +
* '''Description:''' similar to acriflavin resistance protein <br/><br/>
  
 +
{| align="right" border="1" cellpadding="2"
 +
|-
 +
|style="background:#ABCDEF;" align="center"|'''Gene name'''
 +
|''swrC''
 +
|-
 +
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''yerP''
 +
|-
 +
|style="background:#ABCDEF;" align="center"| '''Essential''' || no
 +
|-
 +
|style="background:#ABCDEF;" align="center"| '''Product''' || unknown
 +
|-
 +
|style="background:#ABCDEF;" align="center"|'''Function''' || unknown
 +
|-
 +
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 114 kDa, 4.764 
 +
|-
 +
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 3195 bp, 1065 aa
 +
|-
 +
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yerO]]'', ''[[dgkB]]''
 +
|-
 +
|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/yerP_nucleotide.txt    Gene sequence      (+200bp)  ]'''
 +
|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/yerP_protein.txt Protein sequence]'''
 +
|-
 +
|colspan="2" | '''Genetic context''' <br/> [[Image:yerP_context.gif]]
 +
<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 +
|-
 +
|}
 +
 +
__TOC__
 +
 +
<br/><br/>
 +
 +
=The gene=
 +
 +
=== Basic information ===
 +
 +
* '''Locus tag:''' BSU06710
 +
 +
===Phenotypes of a mutant ===
 +
 +
=== Database entries ===
 +
 +
* '''DBTBS entry:''' no entry
 +
 +
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG12842]
 +
 +
=== Additional information===
 +
 +
 +
=The protein=
 +
 +
=== Basic information/ Evolution ===
 +
 +
* '''Catalyzed reaction/ biological activity:'''
 +
 +
* '''Protein family:'''
 +
 +
* '''Paralogous protein(s):'''
 +
 +
=== Extended information on the protein ===
 +
 +
* '''Kinetic information:'''
 +
 +
* '''Domains:'''
 +
 +
* '''Modification:'''
 +
 +
* '''Cofactor(s):'''
 +
 +
* '''Effectors of protein activity:'''
 +
 +
* '''Interactions:'''
 +
 +
* '''Localization:''' membrane [http://www.ncbi.nlm.nih.gov/pubmed/18763711 PubMed]
 +
 +
=== Database entries ===
 +
 +
* '''Structure:'''
 +
 +
* '''Swiss prot entry:'''
 +
 +
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU06710]
 +
 +
* '''E.C. number:'''
 +
 +
=== Additional information===
 +
 +
=Expression and regulation=
 +
 +
* '''Operon:'''
 +
 +
* '''[[Sigma factor]]:'''
 +
 +
* '''Regulation:'''
 +
 +
* '''Regulatory mechanism:'''
 +
 +
* '''Additional information:'''
 +
 +
=Biological materials =
 +
 +
* '''Mutant:'''
 +
 +
* '''Expression vector:'''
 +
       
 +
* '''lacZ fusion:'''
 +
 +
* '''GFP fusion:'''
 +
 +
* '''two-hybrid system:'''
 +
 +
* '''Antibody:'''
 +
 +
=Labs working on this gene/protein=
 +
 +
=Your additional remarks=
 +
 +
=References=
 +
 +
<pubmed>18763711, 11709341 15066026 </pubmed>

Revision as of 14:25, 7 July 2009

  • Description: similar to acriflavin resistance protein

Gene name swrC
Synonyms yerP
Essential no
Product unknown
Function unknown
MW, pI 114 kDa, 4.764
Gene length, protein length 3195 bp, 1065 aa
Immediate neighbours yerO, dgkB
Gene sequence (+200bp) Protein sequence
Genetic context
YerP context.gif
This image was kindly provided by SubtiList



The gene

Basic information

  • Locus tag: BSU06710

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization: membrane PubMed

Database entries

  • Structure:
  • Swiss prot entry:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Operon:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Hannes Hahne, Susanne Wolff, Michael Hecker, Dörte Becher
From complementarity to comprehensiveness--targeting the membrane proteome of growing Bacillus subtilis by divergent approaches.
Proteomics: 2008, 8(19);4123-36
[PubMed:18763711] [WorldCat.org] [DOI] (I p)

Daniel B Kearns, Frances Chu, Rivka Rudner, Richard Losick
Genes governing swarming in Bacillus subtilis and evidence for a phase variation mechanism controlling surface motility.
Mol Microbiol: 2004, 52(2);357-69
[PubMed:15066026] [WorldCat.org] [DOI] (P p)

K Tsuge, Y Ohata, M Shoda
Gene yerP, involved in surfactin self-resistance in Bacillus subtilis.
Antimicrob Agents Chemother: 2001, 45(12);3566-73
[PubMed:11709341] [WorldCat.org] [DOI] (P p)

Retrieved from "http://134.76.20.203/wiki//index.php?title=SwrC&oldid=104402"