Difference between revisions of "SurA"

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(Expression and regulation)
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|style="background:#ABCDEF;" align="center"|'''Function''' || unknown
 
|style="background:#ABCDEF;" align="center"|'''Function''' || unknown
 
|-
 
|-
|style="background:#ABCDEF;" align="center"| '''Gene length''' ||  bp
+
|style="background:#ABCDEF;" align="center"| '''Gene length''' ||  280 bp
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yndK]]'', ''[[yndL]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yndK]]'', ''[[yndL]]''
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=Expression and regulation=
 
=Expression and regulation=
  
* '''Operon:''' ''surA''
+
* '''Operon:''' ''surA'' [http://www.ncbi.nlm.nih.gov/sites/entrez/16385044 PubMed]
  
* '''Sigma factor:''' [[SigA]]
+
* '''Sigma factor:''' [[SigA]] [http://www.ncbi.nlm.nih.gov/sites/entrez/16385044 PubMed]
  
* '''Regulation:''' induced at the beginning of sporulation ([[Spo0A]])
+
* '''Regulation:''' induced at the beginning of sporulation ([[Spo0A]]) [http://www.ncbi.nlm.nih.gov/sites/entrez/16385044 PubMed]
  
* '''Regulatory mechanism:''' Spo0A: unknown, indirect effect
+
* '''Regulatory mechanism:''' Spo0A: unknown, indirect effect, probably via [[AbrB]] [http://www.ncbi.nlm.nih.gov/sites/entrez/16385044 PubMed]
  
 
* '''Additional information:'''
 
* '''Additional information:'''
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=Labs working on this gene/RNA=
 
=Labs working on this gene/RNA=
  
Kouji Nakamura, Tsukuba, University, Japan
 
  
 
=Your additional remarks=
 
=Your additional remarks=
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=References=
 
=References=
  
# Saito S, Kakeshita H, Nakamura K (2009) Novel small RNA-encoding genes in the intergenic regions of ''Bacillus subtilis''. ''Gene'' '''428:''' 2-8. [http://www.ncbi.nlm.nih.gov/sites/entrez/18948176 PubMed]
+
# Silvaggi JM, Perkins JB, Losick R (2006) Genes for small, noncoding RNAs under sporulation control in ''Bacillus subtilis''. ''J. Bacteriol.'' '''188:''' 532-541. [http://www.ncbi.nlm.nih.gov/sites/entrez/16385044 PubMed]

Revision as of 18:02, 20 February 2009

  • Description: small RNA

Gene name surA
Synonyms
Essential no
Product small RNA
Function unknown
Gene length 280 bp
Immediate neighbours yndK, yndL
Gene sequence (+200bp)
Genetic context
File:GenE context.gif








The gene

Basic information

  • Coordinates:

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: no entry
  • Structure:

Additional information

Expression and regulation

  • Regulation: induced at the beginning of sporulation (Spo0A) PubMed
  • Regulatory mechanism: Spo0A: unknown, indirect effect, probably via AbrB PubMed
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:


Labs working on this gene/RNA

Your additional remarks

References

  1. Silvaggi JM, Perkins JB, Losick R (2006) Genes for small, noncoding RNAs under sporulation control in Bacillus subtilis. J. Bacteriol. 188: 532-541. PubMed