Difference between revisions of "SurA"

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(Expression and regulation)
 
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|style="background:#ABCDEF;" align="center"|'''Function''' || unknown
 
|style="background:#ABCDEF;" align="center"|'''Function''' || unknown
 
|-
 
|-
|style="background:#ABCDEF;" align="center"| '''Gene length''' ||  bp
+
|style="background:#ABCDEF;" align="center"| '''Gene length''' ||  280 bp
 
|-
 
|-
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yndK]]'', ''[[yndL]]''
+
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yndK]]'', ''[[pghL]]''
 
|-
 
|-
 
|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/genE.txt    Gene sequence      (+200bp)  ]'''  
 
|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/genE.txt    Gene sequence      (+200bp)  ]'''  
 
|-
 
|-
|colspan="2" | '''Genetic context''' <br/> [[Image:genE_context.gif]]
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|colspan="2" | '''Genetic context''' <br/> [[Image:SurA_context.jpg]]
 +
|-
 +
|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=S655_1915134_1915264_-1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:surA_expression.png|500px]]
 
|-
 
|-
 
|}
 
|}
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<br/><br/><br/><br/><br/>
 
<br/><br/><br/><br/><br/>
 +
= [[Categories]] containing this gene/protein =
 +
{{SubtiWiki category|[[ncRNA]]}}
 +
 +
= This gene is a member of the following [[regulons]] =
 +
 +
 
=The gene=
 
=The gene=
  
 
=== Basic information ===
 
=== Basic information ===
  
* '''Coordinates:'''
+
* '''Locus tag:'''
  
 
===Phenotypes of a mutant ===
 
===Phenotypes of a mutant ===
  
 
=== Database entries ===
 
=== Database entries ===
 +
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=?&redirect=T ?]
 +
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=?&redirect=T ?]
  
 
* '''DBTBS entry:''' no entry
 
* '''DBTBS entry:''' no entry
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=== Additional information===
 
=== Additional information===
 +
 +
  
  
 
=Expression and regulation=
 
=Expression and regulation=
  
* '''Operon:''' ''surA''
+
* '''Operon:''' ''surA'' [http://www.ncbi.nlm.nih.gov/sites/entrez/16385044 PubMed]
  
* '''Sigma factor:''' [[SigA]]
+
* '''Sigma factor:''' [[SigA]] [http://www.ncbi.nlm.nih.gov/sites/entrez/16385044 PubMed]
  
* '''Regulation:''' induced at the beginning of sporulation ([[Spo0A]])
+
* '''Regulation:''' induced at the beginning of sporulation ([[Spo0A]]) [http://www.ncbi.nlm.nih.gov/sites/entrez/16385044 PubMed]
  
* '''Regulatory mechanism:''' Spo0A: unknown, indirect effect
+
* '''Regulatory mechanism:''' [[Spo0A]]: unknown, indirect effect, probably via [[AbrB]] [http://www.ncbi.nlm.nih.gov/sites/entrez/16385044 PubMed]
  
 
* '''Additional information:'''
 
* '''Additional information:'''
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=Labs working on this gene/RNA=
 
=Labs working on this gene/RNA=
  
Kouji Nakamura, Tsukuba, University, Japan
 
  
 
=Your additional remarks=
 
=Your additional remarks=
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=References=
 
=References=
  
# Saito S, Kakeshita H, Nakamura K (2009) Novel small RNA-encoding genes in the intergenic regions of ''Bacillus subtilis''. ''Gene'' '''428:''' 2-8. [http://www.ncbi.nlm.nih.gov/sites/entrez/18948176 PubMed]
+
<pubmed>16385044,20525796</pubmed>
 +
 
 +
[[Category:small RNA]]

Latest revision as of 08:59, 13 July 2015

  • Description: small RNA

Gene name surA
Synonyms
Essential no
Product small RNA
Function unknown
Gene length 280 bp
Immediate neighbours yndK, pghL
Gene sequence (+200bp)
Genetic context
SurA context.jpg
Expression at a glance   PubMed
SurA expression.png








Categories containing this gene/protein

ncRNA

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag:

Phenotypes of a mutant

Database entries

  • BsubCyc: ?
  • BsubCyc: ?
  • DBTBS entry: no entry
  • SubtiList entry: no entry
  • Structure:

Additional information

Expression and regulation

  • Regulation: induced at the beginning of sporulation (Spo0A) PubMed
  • Regulatory mechanism: Spo0A: unknown, indirect effect, probably via AbrB PubMed
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:


Labs working on this gene/RNA

Your additional remarks

References

Irnov Irnov, Cynthia M Sharma, Jörg Vogel, Wade C Winkler
Identification of regulatory RNAs in Bacillus subtilis.
Nucleic Acids Res: 2010, 38(19);6637-51
[PubMed:20525796] [WorldCat.org] [DOI] (I p)

Jessica M Silvaggi, John B Perkins, Richard Losick
Genes for small, noncoding RNAs under sporulation control in Bacillus subtilis.
J Bacteriol: 2006, 188(2);532-41
[PubMed:16385044] [WorldCat.org] [DOI] (P p)