Difference between revisions of "SsbB"

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= [[Categories]] containing this gene/protein =
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{{SubtiWiki category|[[DNA replication]]}}
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= This gene is a member of the following [[regulons]] =
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{{SubtiWiki regulon|[[ComK regulon]]}}
  
 
=The gene=
 
=The gene=
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= Categories containing this gene/protein =
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{{SubtiWiki category|[[DNA replication]]}}
 
 
=The protein=
 
=The protein=
  

Revision as of 00:08, 9 December 2010

  • Description: single-strand DNA-binding protein

Gene name ssbB
Synonyms ywpH
Essential no
Product single-strand DNA-binding protein
Function required for efficient genetic transformation
MW, pI 12 kDa, 6.876
Gene length, protein length 339 bp, 113 aa
Immediate neighbours glcR, ywpG
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
YwpH context.gif
This image was kindly provided by SubtiList



Categories containing this gene/protein

DNA replication

This gene is a member of the following regulons

ComK regulon

The gene

Basic information

  • Locus tag: BSU36310

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s): SsbA

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification: phosphorylated on Tyr by PtkA, dephosphorylated by PtpZ PubMed
  • Cofactor(s):
  • Effectors of protein activity: phosphorylation strongly increases DNA-binding activity PubMed
  • Interactions:
  • Localization: localizes to cell poles in competent cells PubMed

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
    • expressed at the onset of stationary phase PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Naomi Kramer, Jeanette Hahn, David Dubnau
Multiple interactions among the competence proteins of Bacillus subtilis.
Mol Microbiol: 2007, 65(2);454-64
[PubMed:17630974] [WorldCat.org] [DOI] (P p)

Ivan Mijakovic, Dina Petranovic, Boris Macek, Tina Cepo, Matthias Mann, Julian Davies, Peter R Jensen, Dusica Vujaklija
Bacterial single-stranded DNA-binding proteins are phosphorylated on tyrosine.
Nucleic Acids Res: 2006, 34(5);1588-96
[PubMed:16549871] [WorldCat.org] [DOI] (I e)

Jeanette Hahn, Berenike Maier, Bert Jan Haijema, Michael Sheetz, David Dubnau
Transformation proteins and DNA uptake localize to the cell poles in Bacillus subtilis.
Cell: 2005, 122(1);59-71
[PubMed:16009133] [WorldCat.org] [DOI] (P p)

Cordula Lindner, Reindert Nijland, Mariska van Hartskamp, Sierd Bron, Leendert W Hamoen, Oscar P Kuipers
Differential expression of two paralogous genes of Bacillus subtilis encoding single-stranded DNA binding protein.
J Bacteriol: 2004, 186(4);1097-105
[PubMed:14762004] [WorldCat.org] [DOI] (P p)

Mitsuo Ogura, Hirotake Yamaguchi, Kazuo Kobayashi, Naotake Ogasawara, Yasutaro Fujita, Teruo Tanaka
Whole-genome analysis of genes regulated by the Bacillus subtilis competence transcription factor ComK.
J Bacteriol: 2002, 184(9);2344-51
[PubMed:11948146] [WorldCat.org] [DOI] (P p)