Difference between revisions of "SpsD"

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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[spsE]]'', ''[[spsC]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[spsE]]'', ''[[spsC]]''
 
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU37880 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU37880 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU37880 Advanced_DNA]
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU37880 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU37880 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU37880 DNA_with_flanks]
 
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|-
 
|colspan="2" | '''Genetic context''' <br/> [[Image:spsD_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:spsD_context.gif]]

Revision as of 11:34, 14 May 2013

  • Description: spore coat polysaccharide synthesis

Gene name spsD
Synonyms ipa-66d
Essential no
Product unknown
Function spore coat polysaccharide synthesis
Gene expression levels in SubtiExpress: spsD
MW, pI 32 kDa, 5.999
Gene length, protein length 867 bp, 289 aa
Immediate neighbours spsE, spsC
Sequences Protein DNA DNA_with_flanks
Genetic context
SpsD context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
SpsD expression.png
























Categories containing this gene/protein

sporulation proteins

This gene is a member of the following regulons

SigK regulon

The gene

Basic information

  • Locus tag: BSU37880

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
    • expressed late during sporulation in the mother cell (SigK) PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Patrick Eichenberger, Masaya Fujita, Shane T Jensen, Erin M Conlon, David Z Rudner, Stephanie T Wang, Caitlin Ferguson, Koki Haga, Tsutomu Sato, Jun S Liu, Richard Losick
The program of gene transcription for a single differentiating cell type during sporulation in Bacillus subtilis.
PLoS Biol: 2004, 2(10);e328
[PubMed:15383836] [WorldCat.org] [DOI] (I p)

E Presecan, I Moszer, L Boursier, H Cruz Ramos, V de la Fuente, M-F Hullo, C Lelong, S Schleich, A Sekowska, B H Song, G Villani, F Kunst, A Danchin, P Glaser
The Bacillus subtilis genome from gerBC (311 degrees) to licR (334 degrees).
Microbiology (Reading): 1997, 143 ( Pt 10);3313-3328
[PubMed:9353933] [WorldCat.org] [DOI] (P p)