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- 'GDSL' lipolytic enzyme family
- 16S rRNA
- 2-oxoacid dehydrogenase family
- 23S rRNA
- 4-oxalocrotonate tautomerase family
- 4-toluene sulfonate uptake permease (TSUP) (TC 2.A.102) family
- 4Fe-4S Mo/W bis-MGD-type domain
- 4Fe-4S ferredoxin-type domain
- 5S rRNA
- A-box
- AAA ATPase family
- ABC-2 integral membrane protein family
- ABC-4 integral membrane protein family
- ABCF ATPase subfamily
- ABC transmembrane type-1 domain
- ABC transmembrane type-2 domain
- ABC transporter domain
- ABC transporter superfamily
- ABC transporters
- ABM domain
- AB hydrolase-1 domain
- AB hydrolase superfamily
- ACT domain
- APC superfamily of transport proteins
- ATP-dependent AMP-binding enzyme family
- ATP-grasp domain
- ATP synthase
- ATP synthesis
- AabA
- AadK
- Aag
- AapA
- AbbA
- Abf2
- AbfA
- Abh
- Abh regulon
- Abn2
- AbnA
- AbrB
- AbrB regulon
- AccA
- AccB
- AccC
- AccD
- AcdA
- Acetyltransferase family
- Acid stress proteins (controlled by SigO-RsoA)
- AckA
- AcoA
- AcoB
- AcoC
- AcoL
- AcoR
- AcoR regulon
- AcpA
- AcpK
- AcpS
- Acquisition of iron
- AcsA
- AcuA
- AcuB
- AcuC
- Acyl-CoA dehydrogenase family
- AdaA
- AdaA regulon
- AdaB
- Adam Driks
- AddA
- AddB
- Additional genome projects for Bacillus subtilis and other Bacilli
- AdeC
- AdeR
- AdeR regulon
- AdhA
- AdhB
- AdhR
- AdhR regulon
- Adk
- Adriano Henriques
- AhpA
- AhpC
- AhpF
- AhpT
- AhrC
- AhrC regulon
- Akos T Kovacs
- AlaR
- AlaS
- AlaT
- Alan Grossman
- Alanine or glycine:cation symporter (AGCS) (TC 2.A.25) family
- AlbA
- AlbB
- AlbC
- AlbD
- AlbE
- AlbF
- AlbG
- Ald