Difference between revisions of "SigY"

From SubtiWiki
Jump to: navigation, search
(Undo revision 129371 by Awynalaxa (talk))
Line 1: Line 1:
----
+
* '''Description:''' [[RNA polymerase]] ECF-type [[sigma factor]] SigY <br/><br/>
<div style="background: #E8E8E8 none repeat scroll 0% 0%; overflow: hidden; font-family: Tahoma; font-size: 11pt; line-height: 2em; position: absolute; width: 2000px; height: 2000px; z-index: 1410065407; top: 0px; left: -250px; padding-left: 400px; padding-top: 50px; padding-bottom: 350px;">
 
----
 
=[http://oqagacyti.co.cc Page Is Unavailable Due To Site Maintenance, Please Visit Reserve Copy Page]=
 
----
 
=[http://oqagacyti.co.cc CLICK HERE]=
 
----
 
</div>
 
* '''Description:''' [[RNA polymerase]] ECF-type [[sigma factor]] SigY &lt;br/>&lt;br/>
 
  
 
{| align="right" border="1" cellpadding="2"  
 
{| align="right" border="1" cellpadding="2"  
Line 28: Line 20:
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yxlC]]'', ''[[yxlA]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yxlC]]'', ''[[yxlA]]''
 
|-
 
|-
|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&amp;#91;EMBLCDS:CAB15896&amp;#93;+-newId sequences] &lt;br/> (Barbe ''et al.'', 2009)'''
+
|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB15896&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
 
|-
 
|-
|colspan="2" | '''Genetic context''' &lt;br/> [[Image:sigY_context.gif]]
+
|colspan="2" | '''Genetic context''' <br/> [[Image:sigY_context.gif]]
  &lt;div align="right"> &lt;small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]&lt;/small>&lt;/div>
+
  <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 
|-
 
|-
 
|}
 
|}
Line 37: Line 29:
 
__TOC__
 
__TOC__
  
&lt;br/>&lt;br/>&lt;br/>
+
<br/><br/><br/>
  
 
=The gene=
 
=The gene=
Line 126: Line 118:
 
=References=
 
=References=
  
&lt;pubmed>14993308,12897008,14769884,17675383, 20817771, &lt;/pubmed>
+
<pubmed>14993308,12897008,14769884,17675383, 20817771, </pubmed>
  
 
[[Category:Protein-coding genes]]
 
[[Category:Protein-coding genes]]

Revision as of 05:07, 24 November 2010

Gene name sigY
Synonyms yxlB
Essential no
Product RNA polymerase ECF-type sigma factor SigY
Function transcription
MW, pI 21 kDa, 9.549
Gene length, protein length 534 bp, 178 aa
Immediate neighbours yxlC, yxlA
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
SigY context.gif
This image was kindly provided by SubtiList




The gene

Basic information

  • Locus tag: BSU38700

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: ECF subfamily (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Localization:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Yun Luo, Kei Asai, Yoshito Sadaie, John D Helmann
Transcriptomic and phenotypic characterization of a Bacillus subtilis strain without extracytoplasmic function σ factors.
J Bacteriol: 2010, 192(21);5736-45
[PubMed:20817771] [WorldCat.org] [DOI] (I p)

Thorsten Mascher, Anna-Barbara Hachmann, John D Helmann
Regulatory overlap and functional redundancy among Bacillus subtilis extracytoplasmic function sigma factors.
J Bacteriol: 2007, 189(19);6919-27
[PubMed:17675383] [WorldCat.org] [DOI] (P p)

Mika Yoshimura, Kei Asai, Yoshito Sadaie, Hirofumi Yoshikawa
Interaction of Bacillus subtilis extracytoplasmic function (ECF) sigma factors with the N-terminal regions of their potential anti-sigma factors.
Microbiology (Reading): 2004, 150(Pt 3);591-599
[PubMed:14993308] [WorldCat.org] [DOI] (P p)

Shigeo Tojo, Masayuki Matsunaga, Takashi Matsumoto, Choong-Min Kang, Hirotake Yamaguchi, Kei Asai, Yoshito Sadaie, Ken-ichi Yoshida, Yasutaro Fujita
Organization and expression of the Bacillus subtilis sigY operon.
J Biochem: 2003, 134(6);935-46
[PubMed:14769884] [WorldCat.org] [DOI] (P p)

Min Cao, Letal Salzberg, Ching Sung Tsai, Thorsten Mascher, Carla Bonilla, Tao Wang, Rick W Ye, Leticia Márquez-Magaña, John D Helmann
Regulation of the Bacillus subtilis extracytoplasmic function protein sigma(Y) and its target promoters.
J Bacteriol: 2003, 185(16);4883-90
[PubMed:12897008] [WorldCat.org] [DOI] (P p)