Difference between revisions of "SigX"

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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[rsiX]]'', ''[[resE]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[rsiX]]'', ''[[resE]]''
 
|-
 
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|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/sigX_nucleotide.txt    Gene sequence      (+200bp)  ]'''
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|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB14242&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/sigX_protein.txt Protein sequence]'''
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|-
 
|-
 
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|colspan="2" style="background:#FAF8CC;color:#FF0000" align="center" | '''Caution: The sequence for this gene in SubtiList contains errors
 
 
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|colspan="2" | '''Genetic context''' <br/> [[Image:sigX_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:sigX_context.gif]]

Revision as of 23:35, 16 April 2009

Gene name sigX
Synonyms ypuM
Essential no
Product RNA polymerase ECF-type sigma factor SigX
Function cell surface properties
MW, pI 23 kDa, 6.086
Gene length, protein length 582 bp, 194 aa
Immediate neighbours rsiX, resE
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
SigX context.gif
This image was kindly provided by SubtiList



The gene

Basic information

  • Coordinates:

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Genes controlled by SigX

pbpX, csbB, abh, dltA-dltB-dltC-dltD-dltE

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization:

Database entries

  • Structure:
  • Swiss prot entry:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

  1. Huang X, Helmann JD. (1998) Identification of target promoters for the Bacillus subtilis sigma X factor using a consensus-directed search. J Mol Biol. 279: 165-173. PubMed
  2. Serizawa M, Kodama K, Yamamoto H, Kobayashi K, Ogasawara N, Sekiguchi J. (2005) Functional analysis of the YvrGHb two-component system of Bacillus subtilis: identification of the regulated genes by DNA microarray and northern blot analyses. Biosci. Biotechnol. Biochem. 69: 2155-2169. PubMed
  3. Author1, Author2 & Author3 (year) Title Journal volume: page-page. PubMed