Difference between revisions of "SigW regulon"

From SubtiWiki
Jump to: navigation, search
(Important publications on the SigW regulon)
(Genes in this regulon)
 
(10 intermediate revisions by the same user not shown)
Line 5: Line 5:
 
* The [[SigW]] regulon is induced by alkaline shock and by polymyxin B, vancomycin, cephalosporin C, D-cycloserine, and triton X-100.
 
* The [[SigW]] regulon is induced by alkaline shock and by polymyxin B, vancomycin, cephalosporin C, D-cycloserine, and triton X-100.
 
* The [[SigW]] regulon is downregulated in a ''[[rocG]] [[gudB]]'' mutant {{PubMed|22178969}}
 
* The [[SigW]] regulon is downregulated in a ''[[rocG]] [[gudB]]'' mutant {{PubMed|22178969}}
 +
* The [[SigW]] regulon mediates resistance to cell wall antibiotics
 +
 +
==Related ''Subti''Wiki pages==
 +
* [[Resistance against toxins/ antibiotics]]
  
 
= Genes in this [[regulon]] =
 
= Genes in this [[regulon]] =
Line 12: Line 16:
 
* ''[[fatR]]''
 
* ''[[fatR]]''
 
* ''[[fosB]]''
 
* ''[[fosB]]''
* ''[[pbpE]]''
+
* ''[[pbpE]]-[[racX]]''
 
* ''[[pspA]]''
 
* ''[[pspA]]''
* ''[[racX]]''
+
* ''[[sasA]]''
* ''[[rsiW]]''
+
* ''[[sigW]]-[[rsiW]]''
* ''[[sigW]]''
 
 
* ''[[spo0M]]''
 
* ''[[spo0M]]''
 
* ''[[sppA]]''
 
* ''[[sppA]]''
 
* ''[[spx]]''
 
* ''[[spx]]''
* ''[[xpaC]]''
+
* ''[[xpaC]]-[[yaaN]]-[[yaaO]]''
* ''[[yaaN]]''
 
 
* ''[[ybfO]]''
 
* ''[[ybfO]]''
 
* ''[[ybfP]]''
 
* ''[[ybfP]]''
 
* ''[[ybfQ]]''
 
* ''[[ybfQ]]''
* ''[[yceC]]''
+
* ''[[yceC]]-[[yceD]]-[[yceE]]-[[yceF]]-[[yceG]]-[[yceH]]''
* ''[[yceD]]''
+
* ''[[ydbS]]-[[ydbT]]''
* ''[[yceE]]''
 
* ''[[yceF]]''
 
* ''[[yceG]]''
 
* ''[[yceH]]''
 
* ''[[ydbS]]''
 
* ''[[ydbT]]''
 
 
* ''[[ydjO]]''
 
* ''[[ydjO]]''
 
* ''[[ydjP]]''
 
* ''[[ydjP]]''
 
* ''[[yeaA]]''
 
* ''[[yeaA]]''
* ''[[yfhL]]''
+
* ''[[yfhL]]-[[yfhM]]''
* ''[[yfhM]]''
 
 
* ''[[yjbC]]''
 
* ''[[yjbC]]''
 
* ''[[yjoB]]''
 
* ''[[yjoB]]''
* ''[[yknW]]''
+
* ''[[yknW]]-[[yknX]]-[[yknY]]-[[yknZ]]''
* ''[[yknX]]''
 
* ''[[yknY]]''
 
* ''[[yknZ]]''
 
 
* ''[[yoaF]]''
 
* ''[[yoaF]]''
 
* ''[[yoaG]]''
 
* ''[[yoaG]]''
 
* ''[[yobJ]]''
 
* ''[[yobJ]]''
 
* ''[[yozO]]''
 
* ''[[yozO]]''
* ''[[yqeZ]]-[[yqfA]]-[[yqfB]]''
+
* ''[[yqeZ]]-[[floA]]-[[yqfB]]''
 
* ''[[yqjL]]''
 
* ''[[yqjL]]''
 
* ''[[yrhH]]''
 
* ''[[yrhH]]''
Line 58: Line 50:
 
* ''[[yuaF]]-[[floT]]-[[yuaI]]''
 
* ''[[yuaF]]-[[floT]]-[[yuaI]]''
 
* ''[[yvlA]]-[[yvlB]]-[[yvlC]]-[[yvlD]]''
 
* ''[[yvlA]]-[[yvlB]]-[[yvlC]]-[[yvlD]]''
* ''[[ywaC]]''
 
 
* ''[[ywbN]]''
 
* ''[[ywbN]]''
 
* ''[[ywbO]]''
 
* ''[[ywbO]]''
Line 67: Line 58:
  
 
= Important publications on the [[SigW]] [[regulon]] =
 
= Important publications on the [[SigW]] [[regulon]] =
'''Additional publications:'''  {{PubMed|22178969}}
+
<pubmed>23155385,22178969 9683469,16629676,17675383,11866510,9987136,10960106, 23934352,26901131 </pubmed>
<pubmed>9683469,16629676,17675383,11866510,9987136,10960106, </pubmed>
 
  
 
=Back to [[regulons]]=
 
=Back to [[regulons]]=

Latest revision as of 13:25, 24 February 2016

Regulator

SigW

  • The SigW regulon is induced by alkaline shock and by polymyxin B, vancomycin, cephalosporin C, D-cycloserine, and triton X-100.
  • The SigW regulon is downregulated in a rocG gudB mutant PubMed
  • The SigW regulon mediates resistance to cell wall antibiotics

Related SubtiWiki pages

Genes in this regulon

Important publications on the SigW regulon

John D Helmann
Bacillus subtilis extracytoplasmic function (ECF) sigma factors and defense of the cell envelope.
Curr Opin Microbiol: 2016, 30;122-132
[PubMed:26901131] [WorldCat.org] [DOI] (I p)

Chun-Kai Yang, Phang C Tai, Chung-Dar Lu
Time-related transcriptome analysis of B. subtilis 168 during growth with glucose.
Curr Microbiol: 2014, 68(1);12-20
[PubMed:23934352] [WorldCat.org] [DOI] (I p)

Jessica C Zweers, Pierre Nicolas, Thomas Wiegert, Jan Maarten van Dijl, Emma L Denham
Definition of the σ(W) regulon of Bacillus subtilis in the absence of stress.
PLoS One: 2012, 7(11);e48471
[PubMed:23155385] [WorldCat.org] [DOI] (I p)

Yong Heon Lee, Anthony W Kingston, John D Helmann
Glutamate dehydrogenase affects resistance to cell wall antibiotics in Bacillus subtilis.
J Bacteriol: 2012, 194(5);993-1001
[PubMed:22178969] [WorldCat.org] [DOI] (I p)

Thorsten Mascher, Anna-Barbara Hachmann, John D Helmann
Regulatory overlap and functional redundancy among Bacillus subtilis extracytoplasmic function sigma factors.
J Bacteriol: 2007, 189(19);6919-27
[PubMed:17675383] [WorldCat.org] [DOI] (P p)

Bronwyn G Butcher, John D Helmann
Identification of Bacillus subtilis sigma-dependent genes that provide intrinsic resistance to antimicrobial compounds produced by Bacilli.
Mol Microbiol: 2006, 60(3);765-82
[PubMed:16629676] [WorldCat.org] [DOI] (P p)

Min Cao, Phil A Kobel, Maud M Morshedi, Ming Fang Winston Wu, Chris Paddon, John D Helmann
Defining the Bacillus subtilis sigma(W) regulon: a comparative analysis of promoter consensus search, run-off transcription/macroarray analysis (ROMA), and transcriptional profiling approaches.
J Mol Biol: 2002, 316(3);443-57
[PubMed:11866510] [WorldCat.org] [DOI] (P p)

M S Turner, J D Helmann
Mutations in multidrug efflux homologs, sugar isomerases, and antimicrobial biosynthesis genes differentially elevate activity of the sigma(X) and sigma(W) factors in Bacillus subtilis.
J Bacteriol: 2000, 182(18);5202-10
[PubMed:10960106] [WorldCat.org] [DOI] (P p)

X Huang, A Gaballa, M Cao, J D Helmann
Identification of target promoters for the Bacillus subtilis extracytoplasmic function sigma factor, sigma W.
Mol Microbiol: 1999, 31(1);361-71
[PubMed:9987136] [WorldCat.org] [DOI] (P p)

X Huang, K L Fredrick, J D Helmann
Promoter recognition by Bacillus subtilis sigmaW: autoregulation and partial overlap with the sigmaX regulon.
J Bacteriol: 1998, 180(15);3765-70
[PubMed:9683469] [WorldCat.org] [DOI] (P p)


Back to regulons