Difference between revisions of "SigW"

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(Genes controlled by SigW)
(Genes controlled by SigW)
Line 63: Line 63:
 
=== Genes controlled by SigW ===
 
=== Genes controlled by SigW ===
  
''[[pbpE]]'', ''[[abh]]''
+
''[[abh]]'', ''[[pbpE]]'', ''[[xpaC]]-[[yaaN]]''
  
 
=== Extended information on the protein ===
 
=== Extended information on the protein ===

Revision as of 17:09, 4 March 2009

  • Description: write here

Gene name sigW
Synonyms ybbL
Essential no
Product RNA polymerase ECF sigma factor (sigma-W)
Function probably activates a large stationary-phase regulon

that functions in detoxification, production of antimicrobial compounds

or both (pbpE-racX, yteI, yuaG, yknXYZ, ydjP, yfhM)

MW, pI 21 kDa, 8.614
Gene length, protein length 561 bp, 187 aa
Immediate neighbours trnSL-Gln2, ybbM
Gene sequence (+200bp) Protein sequence
Genetic context
SigW context.gif



The gene

Basic information

  • Coordinates:

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Genes controlled by SigW

abh, pbpE, xpaC-yaaN

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization:

Database entries

  • Structure:
  • Swiss prot entry:
  • KEGG entry:
  • E.C. number:

Additional information

Expression and regulation

  • Operon:
  • Sigma factor:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

John Helmann, Cornell University, USA Homepage

Your additional remarks

References

  1. Author1, Author2 & Author3 (year) Title Journal volume: page-page. PubMed