Difference between revisions of "SigD"

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(Genes/ operons controlled by SigD)
(Genes/ operons controlled by SigD)
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=== Genes/ operons controlled by SigD ===
 
=== Genes/ operons controlled by SigD ===
''[[dltA]]-[[dltB]]-[[dltC]]-[[dltD]]-[[dltE]]'', ''[[cheV]]'', ''[[degR]]'', ''[[epr]]'', ''[[hag]]'', ''[[lytA]]-[[lytB]]-[[lytC]]'', ''[[lytD]]'', ''[[lytF]]'', ''[[tlpA]]-[[mcpA]]''
+
''[[dltA]]-[[dltB]]-[[dltC]]-[[dltD]]-[[dltE]]'', ''[[cheV]]'', ''[[degR]]'', ''[[epr]]'', ''[[hag]]'', ''[[lytA]]-[[lytB]]-[[lytC]]'', ''[[lytD]]'', ''[[lytF]]'', ''[[tlpA]]-[[mcpA]]'', ''[[mcpB]]'', ''[[mcpC]]'', ''[[motA]]-[[motB]]'', ''[[nfrA]]-[[ywcH]]''
  
 
=== Extended information on the protein ===
 
=== Extended information on the protein ===

Revision as of 09:19, 5 March 2009

  • Description: write here

Gene name sigD
Synonyms flaB
Essential no
Product RNA polymerase sigma-28 factor (sigma-D)
Function regulon includes genes involved in flagellar synthesis, motility, chemotaxis, autolysis
MW, pI 29 kDa, 5.167
Gene length, protein length 762 bp, 254 aa
Immediate neighbours cheD, swrB
Gene sequence (+200bp) Protein sequence
Genetic context
SigD context.gif



The gene

Basic information

  • Coordinates:

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Genes/ operons controlled by SigD

dltA-dltB-dltC-dltD-dltE, cheV, degR, epr, hag, lytA-lytB-lytC, lytD, lytF, tlpA-mcpA, mcpB, mcpC, motA-motB, nfrA-ywcH

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization:

Database entries

  • Structure:
  • Swiss prot entry:
  • KEGG entry:
  • E.C. number:

Additional information

Expression and regulation

  • Operon:
  • Sigma factor:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system: B. pertussis adenylate cyclase-based bacterial two hybrid system (BACTH), available in Stülke lab
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

  1. Author1, Author2 & Author3 (year) Title Journal volume: page-page. PubMed