Difference between revisions of "SecDF"

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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yrvC]]'', ''[[comN]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yrvC]]'', ''[[comN]]''
 
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU27650 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU27650 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU27650 Advanced_DNA]
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU27650 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU27650 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU27650 DNA_with_flanks]
 
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Revision as of 10:52, 14 May 2013

  • Description: preprotein translocase subunit (ATPase)

Gene name secDF
Synonyms secF, secD
Essential no
Product preprotein translocase subunit (ATPase)
Function protein secretion
Gene expression levels in SubtiExpress: secDF
Metabolic function and regulation of this protein in SubtiPathways:
Protein secretion
MW, pI 81 kDa, 9.519
Gene length, protein length 2211 bp, 737 aa
Immediate neighbours yrvC, comN
Sequences Protein DNA DNA_with_flanks
Genetic context
SecDF context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
SecDF expression.png
























Categories containing this gene/protein

protein secretion, cell envelope stress proteins (controlled by SigM, V, W, X, Y), membrane proteins

This gene is a member of the following regulons

SigM regulon

The gene

Basic information

  • Locus tag: BSU27650

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Operon:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Hannes Hahne, Susanne Wolff, Michael Hecker, Dörte Becher
From complementarity to comprehensiveness--targeting the membrane proteome of growing Bacillus subtilis by divergent approaches.
Proteomics: 2008, 8(19);4123-36
[PubMed:18763711] [WorldCat.org] [DOI] (I p)

Warawan Eiamphungporn, John D Helmann
The Bacillus subtilis sigma(M) regulon and its contribution to cell envelope stress responses.
Mol Microbiol: 2008, 67(4);830-48
[PubMed:18179421] [WorldCat.org] [DOI] (P p)

Aileen Rubio, Xin Jiang, Kit Pogliano
Localization of translocation complex components in Bacillus subtilis: enrichment of the signal recognition particle receptor at early sporulation septa.
J Bacteriol: 2005, 187(14);5000-2
[PubMed:15995216] [WorldCat.org] [DOI] (P p)