Difference between revisions of "ScoC"

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(Expression and regulation)
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=Expression and regulation=
 
=Expression and regulation=
  
* '''Operon:'''  
+
* '''Operon:''' ''scoC'' {{PubMed|3131303}}
  
 
* '''[[Sigma factor]]:'''  
 
* '''[[Sigma factor]]:'''  
  
 
* '''Regulation:'''  
 
* '''Regulation:'''  
** expressed upon transition into the stationary phase ([[AbrB]]) [http://www.ncbi.nlm.nih.gov/sites/entrez/2504584 PubMed]
+
** expressed upon transition into the stationary phase ([[AbrB]]) {{PubMed|2504584}}
  
 
* '''Regulatory mechanism:'''  
 
* '''Regulatory mechanism:'''  
** [[AbrB]]:  transcription activation [http://www.ncbi.nlm.nih.gov/sites/entrez/2504584 PubMed]
+
** [[AbrB]]:  transcription activation {{PubMed|2504584}}
 +
** [[SenS]]: positive regulation {{PubMed|16321961}}
 +
** [[SalA]]: negative regulation {{PubMed|15126467}}
  
* '''Additional information:'''  
+
* '''Additional information:'''
  
 
=Biological materials =
 
=Biological materials =

Revision as of 19:40, 5 September 2009

  • Description: transcriptional repressor of sporulation and extracellular proteases genes (aprE), represses also hag and flgM expression

Gene name scoC
Synonyms hpr, catA
Essential no
Product transcriptional repressor (MarR family)
Function regulation of sporulation and degradative enzyme genes
MW, pI 23 kDa, 5.188
Gene length, protein length 609 bp, 203 aa
Immediate neighbours yhaI, yhaH
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
Hpr context.gif
This image was kindly provided by SubtiList




The gene

Basic information

  • Locus tag: BSU09990

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Localization:

Database entries

  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
    • expressed upon transition into the stationary phase (AbrB) PubMed
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References