Difference between revisions of "Sandbox"

From SubtiWiki
Jump to: navigation, search
Line 1: Line 1:
−
* '''Description:''' tRNA-Ile <br/><br/>
+
* '''Description:''' tRNA-Asn
  
 
{| align="right" border="1" cellpadding="2"  
 
{| align="right" border="1" cellpadding="2"  
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"|'''Gene name'''
 
|style="background:#ABCDEF;" align="center"|'''Gene name'''
−
|''trnA-Ile''
+
|''trnB-Asn''
 
|-
 
|-
−
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
+
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''trnE ''
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"| '''Essential''' || no  
 
|style="background:#ABCDEF;" align="center"| '''Essential''' || no  
 
|-
 
|-
−
|style="background:#ABCDEF;" align="center"| '''Product''' || transfer RNA-Ile
+
|style="background:#ABCDEF;" align="center"| '''Product''' || transfer RNA-Asn
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"|'''Function''' || translation  
 
|style="background:#ABCDEF;" align="center"|'''Function''' || translation  
 
|-
 
|-
−
|style="background:#ABCDEF;" align="center"| '''Gene length''' || 77 bp
+
|style="background:#ABCDEF;" align="center"| '''Gene length''' || 75 bp
 +
|-|-
 +
 
 +
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[trnB-Ser2]]'', ''[[trnB-Ile2]]''
 
|-
 
|-
−
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[rrnA-16S]]'', ''[[trnA-Ala]]''
+
|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/trnB-Asn_nucleotide.txt    Gene sequence      (+200bp)  ]'''  
 +
|style="background:#FAF8CC;" align="center"|''' '''
 
|-
 
|-
−
|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/trnA-Ile_nucleotide.txt    Gene sequence      (+200bp)  ]'''
+
|colspan="2" | '''Genetic context''' <br/> [[Image:trnB-Asn_context.gif]]
−
|-
 
−
|colspan="2" | '''Genetic context''' <br/> [[Image:trnA-Ile_context.gif]]
 
 
  <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 
  <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 
|-
 
|-
Line 27: Line 29:
 
__TOC__
 
__TOC__
  
−
<br/><br/><br/><br/><br/><br/>
+
<br/><br/>
  
 +
<br/><br/><br/><br/><br/>
 
=The gene=
 
=The gene=
  
Line 41: Line 44:
 
* '''DBTBS entry:''' no entry
 
* '''DBTBS entry:''' no entry
  
−
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG00012]
+
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG00092]
 +
 +
* '''Structure:'''
  
−
* '''Structure:'''
+
=== Additional information===
  
−
=== Additional information===
 
  
 +
 
  
 
=Expression and regulation=
 
=Expression and regulation=
  
−
* '''Operon:''' ''[[rrnA-16S]]-[[trnA-Ile]]-[[trnA-Ala]]-[[rrnA-23S]]-[[rrnA-5S]]'' [http://www.ncbi.nlm.nih.gov/sites/entrez/6312418 PubMed]
+
* '''Operon:'''  
  
−
* '''Sigma factor:''' [[SigA]] [http://www.ncbi.nlm.nih.gov/sites/entrez/6312418 PubMed]
+
* '''Sigma factor:'''  
  
 
* '''Regulation:'''  
 
* '''Regulation:'''  
Line 67: Line 72:
 
          
 
          
 
* '''lacZ fusion:'''
 
* '''lacZ fusion:'''
 +
 +
* '''GFP fusion:'''
  
 
* '''two-hybrid system:'''  
 
* '''two-hybrid system:'''  
Line 72: Line 79:
 
* '''Antibody:'''
 
* '''Antibody:'''
  
−
=Labs working on this gene/RNA=
+
=Labs working on this gene/protein=
  
 
=Your additional remarks=
 
=Your additional remarks=
Line 78: Line 85:
 
=References=
 
=References=
  
−
<pubmed>6312418, </pubmed>
+
<pubmed>2414156, </pubmed>
−
# Ogasawara et al. (1983) Structure and organization of rRNA operons in the region of the replication origin of the ''Bacillus subtilis'' chromosome.''Nucl. Acids Res.'' '''11:''' 6301-6318. [http://www.ncbi.nlm.nih.gov/sites/entrez/6312418 PubMed]
+
# Green CJ, Stewart GC, Hollis MA, Vold BS, Bott KF (1985) Nucleotide sequence of the ''Bacillus subtilis'' ribosomal RNA operon, ''rrnB''.''Nucl. Acids Res.'' '''37:''' 261-266. [http://www.ncbi.nlm.nih.gov/sites/entrez/2414156 PubMed]
 
# Author1, Author2 & Author3 (year) Title ''Journal'' '''volume:''' page-page. [http://www.ncbi.nlm.nih.gov/sites/entrez/PMID PubMed]
 
# Author1, Author2 & Author3 (year) Title ''Journal'' '''volume:''' page-page. [http://www.ncbi.nlm.nih.gov/sites/entrez/PMID PubMed]

Revision as of 13:39, 8 June 2009

  • Description: tRNA-Asn
Gene name trnB-Asn
Synonyms trnE
Essential no
Product transfer RNA-Asn
Function translation
Gene length 75 bp
Immediate neighbours trnB-Ser2, trnB-Ile2
Gene sequence (+200bp)
Genetic context
TrnB-Asn context.gif
This image was kindly provided by SubtiList








The gene

Basic information

  • Locus tag:

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]
  • Structure:

Additional information

Expression and regulation

  • Operon:
  • Sigma factor:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

C J Green, G C Stewart, M A Hollis, B S Vold, K F Bott
Nucleotide sequence of the Bacillus subtilis ribosomal RNA operon, rrnB.
Gene: 1985, 37(1-3);261-6
[PubMed:2414156] [WorldCat.org] [DOI] (P p)

  1. Green CJ, Stewart GC, Hollis MA, Vold BS, Bott KF (1985) Nucleotide sequence of the Bacillus subtilis ribosomal RNA operon, rrnB.Nucl. Acids Res. 37: 261-266. PubMed
  2. Author1, Author2 & Author3 (year) Title Journal volume: page-page. PubMed
Retrieved from "https://subtiwiki.uni-goettingen.de/wiki//index.php?title=Sandbox&oldid=88967"