Difference between revisions of "Sandbox"

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* '''Description:''' dipeptide ABC transporter (permease) <br/><br/>
+
* '''Description:''' dipeptide ABC transporter (ATP-binding protein) <br/><br/>
  
 
{| align="right" border="1" cellpadding="2"  
 
{| align="right" border="1" cellpadding="2"  
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"|'''Gene name'''
 
|style="background:#ABCDEF;" align="center"|'''Gene name'''
|''dppC''
+
|''dppD''
 
|-
 
|-
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''dciAC ''
+
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''dciAD ''
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"| '''Essential''' || no  
 
|style="background:#ABCDEF;" align="center"| '''Essential''' || no  
 
|-
 
|-
|style="background:#ABCDEF;" align="center"| '''Product''' || dipeptide ABC transporter (permease)
+
|style="background:#ABCDEF;" align="center"| '''Product''' || dipeptide ABC transporter (ATP-binding protein)
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"|'''Function''' || uptake of dipeptides  
 
|style="background:#ABCDEF;" align="center"|'''Function''' || uptake of dipeptides  
 
|-
 
|-
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 35 kDa, 9.813  
+
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 36 kDa, 7.516  
 
|-
 
|-
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 960 bp, 320 aa  
+
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 1005 bp, 335 aa  
 
|-
 
|-
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[dppB]]'', ''[[dppD]]''
+
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[dppC]]'', ''[[dppE]]''
 
|-
 
|-
|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB13151&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
+
|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB13152&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
 
|-
 
|-
|colspan="2" | '''Genetic context''' <br/> [[Image:dppC_context.gif]]
+
|colspan="2" | '''Genetic context''' <br/> [[Image:dppD_context.gif]]
 
  <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 
  <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 
|-
 
|-
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=== Basic information ===
 
=== Basic information ===
  
* '''Locus tag:''' BSU12940
+
* '''Locus tag:''' BSU12950
  
 
===Phenotypes of a mutant ===
 
===Phenotypes of a mutant ===
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* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/dppABCDE.html]
 
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/dppABCDE.html]
  
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG10844]
+
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG10845]
  
 
=== Additional information===
 
=== Additional information===
Line 54: Line 54:
 
* '''Catalyzed reaction/ biological activity:'''  
 
* '''Catalyzed reaction/ biological activity:'''  
  
* '''Protein family:''' ABC transmembrane type-1 domain (according to Swiss-Prot)
+
* '''Protein family:''' ABC transporter family (according to Swiss-Prot)
  
 
* '''Paralogous protein(s):'''
 
* '''Paralogous protein(s):'''
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* '''Kinetic information:'''
 
* '''Kinetic information:'''
  
* '''Domains:'''  
+
* '''Domains:''' ABC transporter domain (according to Swiss-Prot)
  
 
* '''Modification:'''
 
* '''Modification:'''
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* '''Structure:'''
 
* '''Structure:'''
  
* '''Swiss prot entry:''' [http://www.uniprot.org/uniprot/P26904 P26904]
+
* '''Swiss prot entry:''' [http://www.uniprot.org/uniprot/P26905 P26905]
  
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu+BSU12940]
+
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu+BSU12950]
  
 
* '''E.C. number:'''
 
* '''E.C. number:'''

Revision as of 20:37, 10 June 2009

  • Description: dipeptide ABC transporter (ATP-binding protein)

Gene name dppD
Synonyms dciAD
Essential no
Product dipeptide ABC transporter (ATP-binding protein)
Function uptake of dipeptides
MW, pI 36 kDa, 7.516
Gene length, protein length 1005 bp, 335 aa
Immediate neighbours dppC, dppE
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
DppD context.gif
This image was kindly provided by SubtiList



The gene

Basic information

  • Locus tag: BSU12950

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: ABC transporter family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains: ABC transporter domain (according to Swiss-Prot)
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization: cell membrane (according to Swiss-Prot)

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

  1. Author1, Author2 & Author3 (year) Title Journal volume: page-page. PubMed