Difference between revisions of "Sandbox"

From SubtiWiki
Jump to: navigation, search
Line 1: Line 1:
−
* '''Description:''' ribosomal protein  <br/><br/>
+
* '''Description:''' write here <br/><br/>
  
 
{| align="right" border="1" cellpadding="2"  
 
{| align="right" border="1" cellpadding="2"  
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"|'''Gene name'''
 
|style="background:#ABCDEF;" align="center"|'''Gene name'''
−
|''rplK''
+
|''trnSL-Met1''
 
|-
 
|-
−
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''relC, tsp ''
+
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"| '''Essential''' || no  
 
|style="background:#ABCDEF;" align="center"| '''Essential''' || no  
 
|-
 
|-
−
|style="background:#ABCDEF;" align="center"| '''Product''' || ribosomal protein L11 (BL11)
+
|style="background:#ABCDEF;" align="center"| '''Product''' || transfer RNA-Met
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"|'''Function''' || translation  
 
|style="background:#ABCDEF;" align="center"|'''Function''' || translation  
 
|-
 
|-
−
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 14 kDa, 9.718 
+
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || kDa,  
 
|-
 
|-
−
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 423 bp, 141 aa  
+
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || bp, aa  
 
|-
 
|-
−
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[nusG]]'', ''[[rplA]]''
+
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yabR]]'', ''[[trnSL-Glu1]]''
 
|-
 
|-
−
|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/rplK_nucleotide.txt    Gene sequence      (+200bp)  ]'''  
+
|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/trnSL-Met1_nucleotide.txt    Gene sequence      (+200bp)  ]'''  
−
|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/rplK_protein.txt Protein sequence]'''
+
|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/trnSL-Met1_protein.txt Protein sequence]'''
 
|-
 
|-
−
|colspan="2" style="background:#FAF8CC;color:#FF0000" align="center" | '''Caution: The sequence for this gene in SubtiList contains errors
+
|colspan="2" | '''Genetic context''' <br/> [[Image:trnSL-Met1_context.gif]]
−
|-
 
−
|colspan="2" | '''Genetic context''' <br/> [[Image:rplK_context.gif]]
 
 
|-
 
|-
 
|}
 
|}
Line 33: Line 31:
 
<br/><br/>
 
<br/><br/>
  
 +
<br/><br/><br/><br/><br/>
 
=The gene=
 
=The gene=
  
Line 43: Line 42:
 
=== Database entries ===
 
=== Database entries ===
  
−
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/rplK.html]
+
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/trnSL-Met1.html]
  
−
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG10163]
+
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG00015]
 +
 +
* '''Structure:'''
  
 
=== Additional information===
 
=== Additional information===
  
  
−
=The protein=
+
 
−
 
 
−
=== Basic information/ Evolution ===
 
−
 
 
−
* '''Catalyzed reaction/ biological activity:'''
 
−
 
 
−
* '''Protein family:'''
 
−
 
 
−
* '''Paralogous protein(s):'''
 
−
 
 
−
=== Extended information on the protein ===
 
−
 
 
−
* '''Kinetic information:'''
 
−
 
 
−
* '''Domains:'''
 
−
 
 
−
* '''Modification:'''
 
−
 
 
−
* '''Cofactor(s):'''
 
−
 
 
−
* '''Effectors of protein activity:'''
 
−
 
 
−
* '''Interactions:'''
 
−
 
 
−
* '''Localization:'''
 
−
 
 
−
=== Database entries ===
 
−
 
 
−
* '''Structure:'''
 
−
 
 
−
* '''Swiss prot entry:'''
 
−
 
 
−
* '''KEGG entry:'''
 
−
 
 
−
* '''E.C. number:'''
 
−
 
 
−
=== Additional information===
 
  
 
=Expression and regulation=
 
=Expression and regulation=

Revision as of 15:51, 24 February 2009

  • Description: write here

Gene name trnSL-Met1
Synonyms
Essential no
Product transfer RNA-Met
Function translation
MW, pI kDa,
Gene length, protein length bp, aa
Immediate neighbours yabR, trnSL-Glu1
Gene sequence (+200bp) Protein sequence
Genetic context
TrnSL-Met1 context.gif








The gene

Basic information

  • Coordinates:

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]
  • Structure:

Additional information

Expression and regulation

  • Operon:
  • Sigma factor:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

  1. Author1, Author2 & Author3 (year) Title Journal volume: page-page. PubMed
Retrieved from "http://134.76.20.203/wiki//index.php?title=Sandbox&oldid=24495"