Difference between revisions of "Sandbox"

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* '''Description:''' [[5S rRNA]]<br/><br/>
+
* '''Description:''' unknown <br/><br/>
 
 
 
{| align="right" border="1" cellpadding="2"  
 
{| align="right" border="1" cellpadding="2"  
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"|'''Gene name'''
 
|style="background:#ABCDEF;" align="center"|'''Gene name'''
|''rrnO-5S''
+
|''yaaC''
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
 
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
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|style="background:#ABCDEF;" align="center"| '''Essential''' || no  
 
|style="background:#ABCDEF;" align="center"| '''Essential''' || no  
 
|-
 
|-
|style="background:#ABCDEF;" align="center"| '''Product''' || ribosomal RNA-5S
+
|style="background:#ABCDEF;" align="center"| '''Product''' || unknown
 +
|-
 +
|style="background:#ABCDEF;" align="center"|'''Function''' || unknown
 +
|-
 +
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU00080 YaaC]
 
|-
 
|-
|style="background:#ABCDEF;" align="center"|'''Function''' || translation
+
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 37 kDa, 7.788 
 
|-
 
|-
|style="background:#ABCDEF;" align="center"| '''Gene length''' || 112 bp
+
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 945 bp, 315 aa
 
|-
 
|-
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[rrnO-23S]]'', ''[[yaaC]]''
+
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[rrnO-5S]]'', ''[[guaB]]''
 
|-
 
|-
|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/rrnO-5S_nucleotide.txt    Gene sequence     (+200bp)  ]'''
+
|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU00080 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU00080 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU00080 DNA_with_flanks]
|style="background:#FAF8CC;" align="center"|'''  '''
 
 
|-
 
|-
|colspan="2" | '''Genetic context''' <br/> [[Image:rrnO-5S_context.gif]]
+
|colspan="2" | '''Genetic context''' <br/> [[Image:yaaC_context.gif]]
 
  <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 
  <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 +
|-
 +
|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yaaC_14847_15794_-1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:yaaC_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU00080]]
 
|-
 
|-
 
|}
 
|}
  
 
__TOC__
 
__TOC__
 
+
<br/><br/><br/><br/>
<br/><br/><br/><br/><br/><br/>
+
<br/><br/><br/><br/>
 +
<br/><br/><br/><br/>
 +
<br/><br/>
  
 
= [[Categories]] containing this gene/protein =
 
= [[Categories]] containing this gene/protein =
{{SubtiWiki category|[[translation]]}}
+
{{SubtiWiki category|[[sporulation proteins]]}}
  
 
= This gene is a member of the following [[regulons]] =
 
= This gene is a member of the following [[regulons]] =
Line 39: Line 45:
  
 
=== Basic information ===
 
=== Basic information ===
 
+
* '''Locus tag:''' BSU00080
* '''Locus tag:'''
 
  
 
===Phenotypes of a mutant ===
 
===Phenotypes of a mutant ===
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* '''DBTBS entry:''' no entry
 
* '''DBTBS entry:''' no entry
  
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG00009]
+
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG10072]
 +
 
 +
=== Additional information===
 +
 
 +
 
 +
 
 +
 
 +
=The protein=
 +
 
 +
=== Basic information/ Evolution ===
 +
 
 +
* '''Catalyzed reaction/ biological activity:'''
 +
 
 +
* '''Protein family:'''
  
* '''Structure:'''
+
* '''Paralogous protein(s):'''
  
=== Additional information===
+
=== Extended information on the protein ===
 +
 
 +
* '''Kinetic information:'''
 +
 
 +
* '''Domains:'''
 +
 
 +
* '''Modification:'''
 +
 
 +
* '''Cofactor(s):'''
 +
 
 +
* '''Effectors of protein activity:'''
 +
 
 +
* '''[[SubtInteract|Interactions]]:'''
 +
 
 +
* '''[[Localization]]:'''
 +
 
 +
=== Database entries ===
 +
 
 +
* '''Structure:'''
 +
 
 +
* '''UniProt:''' [http://www.uniprot.org/uniprot/P37526 P37526]
  
 +
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU00080]
  
 +
* '''E.C. number:'''
 +
 +
=== Additional information===
  
 
=Expression and regulation=
 
=Expression and regulation=
  
* '''Operon:''' ''rrnO'' operon (''[[rrnO-16S]] - [[trnO-Ile]] - [[trnO-Ala]] -[[rrnO-23S]] - [[rrnO-5S]]'') [http://www.ncbi.nlm.nih.gov/sites/entrez/6312418 PubMed]
+
* '''Operon:''' ''yaaC'' (chromosomal arrangement)
  
* '''Sigma factor:''' [[SigA]] [http://www.ncbi.nlm.nih.gov/sites/entrez/6312418 PubMed]
+
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yaaC_14847_15794_-1 yaaC] {{PubMed|22383849}}
 +
 
 +
* '''[[Sigma factor]]:'''
  
 
* '''Regulation:'''  
 
* '''Regulation:'''  
Line 88: Line 132:
 
=References=
 
=References=
  
<pubmed>6312418, 11976317 20634236 </pubmed>
+
[[Category:Protein-coding genes]]
 
 
[[Category:Ribosomal RNA]]
 

Revision as of 14:54, 11 November 2013

  • Description: unknown

Gene name yaaC
Synonyms
Essential no
Product unknown
Function unknown
Gene expression levels in SubtiExpress: YaaC
MW, pI 37 kDa, 7.788
Gene length, protein length 945 bp, 315 aa
Immediate neighbours rrnO-5S, guaB
Sequences Protein DNA DNA_with_flanks
Genetic context
YaaC context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YaaC expression.png















Categories containing this gene/protein

sporulation proteins

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU00080

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Operon: yaaC (chromosomal arrangement)
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References