Difference between revisions of "Sandbox"

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* '''Description:''' repair, recombination <br/><br/>
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#REDIRECT [[RemB]]
{| align="right" border="1" cellpadding="2"
 
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|style="background:#ABCDEF;" align="center"|'''Gene name'''
 
|''recF''
 
|-
 
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
 
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|style="background:#ABCDEF;" align="center"| '''Essential''' ||
 
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|style="background:#ABCDEF;" align="center"| '''Product''' || unknown
 
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|style="background:#ABCDEF;" align="center"|'''Function''' || repair, recombination
 
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU00040 RecF]
 
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 42 kDa, 7.015 
 
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|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 1110 bp, 370 aa
 
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yaaA]]'', ''[[yaaB]]''
 
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU00040 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU00040 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU00040 DNA_with_flanks]
 
|-
 
|colspan="2" | '''Genetic context''' <br/> [[Image:DnaA_dnaN_yaaA_recF_yaaB_gyrB_context.png]]
 
<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 
|-
 
|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=recF_3437_4549_1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:recF_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU00040]]
 
|-
 
|}
 
 
 
__TOC__
 
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= [[Categories]] containing this gene/protein =
 
{{SubtiWiki category|[[DNA repair/ recombination]]}}
 
 
 
= This gene is a member of the following [[regulons]] =
 
 
 
 
 
=The gene=
 
 
 
=== Basic information ===
 
 
 
* '''Locus tag:''' BSU00040
 
 
 
===Phenotypes of a mutant ===
 
 
 
=== Database entries ===
 
 
 
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/yaaA-recF-yaaB-gyrB.html]
 
 
 
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG10068]
 
 
 
=== Additional information===
 
 
 
 
 
 
 
 
 
=The protein=
 
 
 
=== Basic information/ Evolution ===
 
 
 
* '''Catalyzed reaction/ biological activity:'''
 
 
 
* '''Protein family:''' recF family (according to Swiss-Prot)
 
 
 
* '''Paralogous protein(s):'''
 
 
 
=== Extended information on the protein ===
 
 
 
* '''Kinetic information:'''
 
 
 
* '''Domains:'''
 
 
 
* '''Modification:'''
 
 
 
* '''Cofactor(s):'''
 
 
 
* '''Effectors of protein activity:'''
 
 
 
* '''[[SubtInteract|Interactions]]:'''
 
 
 
* '''[[Localization]]:''' cytoplasm (according to Swiss-Prot)
 
 
 
=== Database entries ===
 
 
 
* '''Structure:'''
 
 
 
* '''UniProt:''' [http://www.uniprot.org/uniprot/P05651 P05651]
 
 
 
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU00040]
 
 
 
* '''E.C. number:'''
 
 
 
=== Additional information===
 
 
 
=Expression and regulation=
 
 
 
* '''Operon:''' ''[[yaaA]]-[[recF]]-[[yaaB]]-[[gyrB]]'' [http://www.ncbi.nlm.nih.gov/sites/entrez/2987848 PubMed]
 
 
 
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=recF_3437_4549_1 recF] {{PubMed|22383849}}
 
 
 
* '''Sigma factor:''' [[SigA]] [http://www.ncbi.nlm.nih.gov/sites/entrez/2987848 PubMed]
 
 
 
* '''Regulation:'''
 
 
 
* '''Regulatory mechanism:'''
 
 
 
* '''Additional information:'''
 
 
 
=Biological materials =
 
 
 
* '''Mutant:'''
 
 
 
* '''Expression vector:'''
 
       
 
* '''lacZ fusion:'''
 
 
 
* '''GFP fusion:'''
 
 
 
* '''two-hybrid system:'''
 
 
 
* '''Antibody:'''
 
 
 
=Labs working on this gene/protein=
 
 
 
=Your additional remarks=
 
 
 
=References=
 
== Reviews ==
 
<pubmed> 22933559 </pubmed>
 
== Original publications ==
 
<pubmed>2987848, 15186413 9207023 </pubmed>
 
 
 
[[Category:Protein-coding genes]]
 

Revision as of 14:40, 11 November 2013

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