Difference between revisions of "Sandbox"

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* '''Description:''' write here <br/><br/>
  
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{| align="right" border="1" cellpadding="2"
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|-
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|style="background:#ABCDEF;" align="center"|'''Gene name'''
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|''licR''
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|-
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|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''celR ''
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|-
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|style="background:#ABCDEF;" align="center"| '''Essential''' || no
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|-
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|style="background:#ABCDEF;" align="center"| '''Product''' || transcriptional regulator
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|-
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|style="background:#ABCDEF;" align="center"|'''Function''' || positive regulation of the lichenan operon (licBCAH)
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|-
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 73 kDa, 6.115 
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|-
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|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 1923 bp, 641 aa
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|-
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' ||
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|-
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|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/licR_nucleotide.txt    Gene sequence      (+200bp)  ]'''
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|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/licR_protein.txt Protein sequence]'''
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|-
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|colspan="2" | '''Genetic context''' <br/> [[Image:licR_context.gif]]
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|-
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|}
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__TOC__
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<br/><br/>
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=The gene=
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=== Basic information ===
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* '''Coordinates:'''
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===Phenotypes of a mutant ===
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=== Database entries ===
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* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/licR.html]
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* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG11346]
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=== Additional information===
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=The protein=
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=== Basic information/ Evolution ===
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* '''Catalyzed reaction/ biological activity:'''
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* '''Protein family:'''
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* '''Paralogous protein(s):'''
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=== Extended information on the protein ===
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* '''Kinetic information:'''
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* '''Domains:'''
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* '''Modification:'''
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* '''Cofactor(s):'''
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* '''Effectors of protein activity:'''
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* '''Interactions:'''
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* '''Localization:'''
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=== Database entries ===
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* '''Structure:'''
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* '''Swiss prot entry:'''
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* '''KEGG entry:'''
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* '''E.C. number:'''
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=== Additional information===
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=Expression and regulation=
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* '''Operon:'''
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* '''Sigma factor:''' [[sigB]]
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* '''Regulation:'''
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* '''Regulatory mechanism:'''
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* '''Additional information:'''
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=Biological materials =
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* '''Mutant:'''
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* '''Expression vector:'''
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* '''lacZ fusion:'''
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* '''GFP fusion:'''
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* '''two-hybrid system:'''
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* '''Antibody:'''
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=Labs working on this gene/protein=
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=Your additional remarks=
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=References=
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# Tobisch, S., P. Glaser, S. Krüger, and M. Hecker. 1997. Identification and characterization of a new ß-glucoside utilization system in ''Bacillus subtilis''. J. Bacteriol. 179:496-506. [http://www.ncbi.nlm.nih.gov/sites/entrez/8990303 PubMed]
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# Tobisch, S., Stülke, J., & Hecker, M. (1999) Regulation of the ''lic'' operon of ''Bacillus subtilis'' and characterization of potential phosphorylation sites of the LicR regulator protein by site-directed mutagenesis. J. Bacteriol. 181: 4995-5003. [http://www.ncbi.nlm.nih.gov/sites/entrez/10438772 PubMed]
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# Author1, Author2 & Author3 (year) Title ''Journal'' '''volume:''' page-page. [http://www.ncbi.nlm.nih.gov/sites/entrez/PMID PubMed]

Revision as of 09:56, 19 February 2009

  • Description: write here

Gene name licR
Synonyms celR
Essential no
Product transcriptional regulator
Function positive regulation of the lichenan operon (licBCAH)
MW, pI 73 kDa, 6.115
Gene length, protein length 1923 bp, 641 aa
Immediate neighbours
Gene sequence (+200bp) Protein sequence
Genetic context
LicR context.gif



The gene

Basic information

  • Coordinates:

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization:

Database entries

  • Structure:
  • Swiss prot entry:
  • KEGG entry:
  • E.C. number:

Additional information

Expression and regulation

  • Operon:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

  1. Tobisch, S., P. Glaser, S. Krüger, and M. Hecker. 1997. Identification and characterization of a new ß-glucoside utilization system in Bacillus subtilis. J. Bacteriol. 179:496-506. PubMed
  2. Tobisch, S., Stülke, J., & Hecker, M. (1999) Regulation of the lic operon of Bacillus subtilis and characterization of potential phosphorylation sites of the LicR regulator protein by site-directed mutagenesis. J. Bacteriol. 181: 4995-5003. PubMed
  3. Author1, Author2 & Author3 (year) Title Journal volume: page-page. PubMed
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