Difference between revisions of "Sandbox"

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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[acoL]]'', ''[[sspH]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[acoL]]'', ''[[sspH]]''
 
|-
 
|-
|style="background:#FAF8CC;" align="center"|'''Sequence ''' ||  
+
|style="background:#FAF8CC;" align="center"|'''Sequence download ''' ||  
''[http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU02660|target="_blank" DNA]'',  
+
[http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU02660 DNA],  
''[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU02660|target="_blank" PROTEIN]'',  
+
[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU02660 Protein],  
''[http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU02660|target="_blank" Advanced_DNA]''
+
[http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU02660 DNA with flanks]
 
|-
 
|-
 
|colspan="2" | '''Genetic context''' <br/> [[Image:acoR_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:acoR_context.gif]]

Revision as of 15:17, 30 April 2013

Gene name acoR
Synonyms yfjG, yzcB
Essential no
Product transcriptional activator (for SigL-dependent promoter)
Function regulation of acetoin utilization
Gene expression levels in SubtiExpress: eno
Interactions involving this protein in SubtInteract: Eno
Metabolic function and regulation of this protein in SubtiPathways:
Central C-metabolism
MW, pI 66 kDa, 7.884
Gene length, protein length 1815 bp, 605 aa
Immediate neighbours acoL, sspH
Sequence download

DNA, Protein, DNA with flanks

Genetic context
AcoR context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
AcoR expression.png




























Categories containing this gene/protein

utilization of specific carbon sources, transcription factors and their control

This gene is a member of the following regulons

CcpA regulon

The AcoR regulon:

The gene

Basic information

  • Locus tag: BSU08100

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Michel Debarbouille, Pasteur Institute, Paris, France Homepage

Your additional remarks

References

Bogumiła C Marciniak, Monika Pabijaniak, Anne de Jong, Robert Dűhring, Gerald Seidel, Wolfgang Hillen, Oscar P Kuipers
High- and low-affinity cre boxes for CcpA binding in Bacillus subtilis revealed by genome-wide analysis.
BMC Genomics: 2012, 13;401
[PubMed:22900538] [WorldCat.org] [DOI] (I e)

Hans-Matti Blencke, Georg Homuth, Holger Ludwig, Ulrike Mäder, Michael Hecker, Jörg Stülke
Transcriptional profiling of gene expression in response to glucose in Bacillus subtilis: regulation of the central metabolic pathways.
Metab Eng: 2003, 5(2);133-49
[PubMed:12850135] [WorldCat.org] [DOI] (P p)

N O Ali, J Bignon, G Rapoport, M Debarbouille
Regulation of the acetoin catabolic pathway is controlled by sigma L in Bacillus subtilis.
J Bacteriol: 2001, 183(8);2497-504
[PubMed:11274109] [WorldCat.org] [DOI] (P p)

M Huang, F B Oppermann-Sanio, A Steinbüchel
Biochemical and molecular characterization of the Bacillus subtilis acetoin catabolic pathway.
J Bacteriol: 1999, 181(12);3837-41
[PubMed:10368162] [WorldCat.org] [DOI] (P p)