Difference between revisions of "Sandbox"
| Line 1: | Line 1: | ||
| − | * '''Description:''' | + | * '''Description:''' write here <br/><br/> |
{| align="right" border="1" cellpadding="2" | {| align="right" border="1" cellpadding="2" | ||
|- | |- | ||
|style="background:#ABCDEF;" align="center"|'''Gene name''' | |style="background:#ABCDEF;" align="center"|'''Gene name''' | ||
| − | |'' | + | |''ycgG'' |
|- | |- | ||
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' '' | |style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' '' | ||
| Line 10: | Line 10: | ||
|style="background:#ABCDEF;" align="center"| '''Essential''' || no | |style="background:#ABCDEF;" align="center"| '''Essential''' || no | ||
|- | |- | ||
| − | |style="background:#ABCDEF;" align="center"| '''Product''' || | + | |style="background:#ABCDEF;" align="center"| '''Product''' || |
|- | |- | ||
| − | |style="background:#ABCDEF;" align="center"|'''Function''' || | + | |style="background:#ABCDEF;" align="center"|'''Function''' || unknown |
|- | |- | ||
| − | |style="background:#ABCDEF;" align="center"| '''Gene length''' || | + | |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 29 kDa, 9.185 |
| + | |- | ||
| + | |style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 759 bp, 253 aa | ||
|- | |- | ||
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || | ||
|- | |- | ||
| − | |style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/ | + | |style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/ycgG_nucleotide.txt Gene sequence (+200bp) ]''' |
| + | |style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/ycgG_protein.txt Protein sequence]''' | ||
|- | |- | ||
| − | |colspan="2" | '''Genetic context''' <br/> [[Image: | + | |colspan="2" | '''Genetic context''' <br/> [[Image:ycgG_context.gif]] |
|- | |- | ||
|} | |} | ||
| Line 38: | Line 41: | ||
=== Database entries === | === Database entries === | ||
| − | * '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/ | + | * '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/ycgG.html] |
| + | |||
| + | * '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG12005] | ||
| + | |||
| + | === Additional information=== | ||
| + | |||
| + | |||
| + | =The protein= | ||
| + | |||
| + | === Basic information/ Evolution === | ||
| + | |||
| + | * '''Catalyzed reaction/ biological activity:''' | ||
| + | |||
| + | * '''Protein family:''' | ||
| + | |||
| + | * '''Paralogous protein(s):''' | ||
| + | |||
| + | === Extended information on the protein === | ||
| + | |||
| + | * '''Kinetic information:''' | ||
| + | |||
| + | * '''Domains:''' | ||
| + | |||
| + | * '''Modification:''' | ||
| + | |||
| + | * '''Cofactor(s):''' | ||
| + | |||
| + | * '''Effectors of protein activity:''' | ||
| + | |||
| + | * '''Interactions:''' | ||
| + | |||
| + | * '''Localization:''' | ||
| − | + | === Database entries === | |
* '''Structure:''' | * '''Structure:''' | ||
| + | |||
| + | * '''Swiss prot entry:''' | ||
| + | |||
| + | * '''KEGG entry:''' | ||
| + | |||
| + | * '''E.C. number:''' | ||
=== Additional information=== | === Additional information=== | ||
| − | |||
=Expression and regulation= | =Expression and regulation= | ||
| − | * '''Operon:''' | + | * '''Operon:''' |
| − | * '''Sigma factor:''' | + | * '''Sigma factor:''' |
* '''Regulation:''' | * '''Regulation:''' | ||
| Line 66: | Line 105: | ||
* '''lacZ fusion:''' | * '''lacZ fusion:''' | ||
| + | |||
| + | * '''GFP fusion:''' | ||
* '''two-hybrid system:''' | * '''two-hybrid system:''' | ||
| Line 71: | Line 112: | ||
* '''Antibody:''' | * '''Antibody:''' | ||
| − | =Labs working on this gene/ | + | =Labs working on this gene/protein= |
=Your additional remarks= | =Your additional remarks= | ||
| Line 77: | Line 118: | ||
=References= | =References= | ||
| − | |||
# Author1, Author2 & Author3 (year) Title ''Journal'' '''volume:''' page-page. [http://www.ncbi.nlm.nih.gov/sites/entrez/PMID PubMed] | # Author1, Author2 & Author3 (year) Title ''Journal'' '''volume:''' page-page. [http://www.ncbi.nlm.nih.gov/sites/entrez/PMID PubMed] | ||
Revision as of 15:26, 11 February 2009
- Description: write here
| Gene name | ycgG |
| Synonyms | |
| Essential | no |
| Product | |
| Function | unknown |
| MW, pI | 29 kDa, 9.185 |
| Gene length, protein length | 759 bp, 253 aa |
| Immediate neighbours | |
| Gene sequence (+200bp) | Protein sequence |
Genetic context 
| |
Contents
The gene
Basic information
- Coordinates:
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family:
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Interactions:
- Localization:
Database entries
- Structure:
- Swiss prot entry:
- KEGG entry:
- E.C. number:
Additional information
Expression and regulation
- Operon:
- Sigma factor:
- Regulation:
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
- Author1, Author2 & Author3 (year) Title Journal volume: page-page. PubMed
