Difference between revisions of "Rny"
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| − | * '''Description:''' | + | * '''Description:''' required for the processing of the ''[[gapA]]'' operon mRNA<br/><br/> |
{| align="right" border="1" cellpadding="2" | {| align="right" border="1" cellpadding="2" | ||
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|style="background:#ABCDEF;" align="center"| '''Essential''' || yes | |style="background:#ABCDEF;" align="center"| '''Essential''' || yes | ||
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| − | |style="background:#ABCDEF;" align="center"| '''Product''' || | + | |style="background:#ABCDEF;" align="center"| '''Product''' || |
|- | |- | ||
| − | |style="background:#ABCDEF;" align="center"|'''Function''' || | + | |style="background:#ABCDEF;" align="center"|'''Function''' || required for the processing of the ''[[gapA]]'' operon mRNA |
|- | |- | ||
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 58,7 kDa, 5.39 | |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 58,7 kDa, 5.39 | ||
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=== Basic information/ Evolution === | === Basic information/ Evolution === | ||
| − | * '''Catalyzed reaction/ biological activity:''' | + | * '''Catalyzed reaction/ biological activity:''' required for the processing of the ''[[gapA]]'' operon mRNA |
* '''Protein family:''' 2',3' cyclic nucleotide phosphodiesterase family | * '''Protein family:''' 2',3' cyclic nucleotide phosphodiesterase family | ||
| − | * '''Paralogous protein(s):''' | + | * '''Paralogous protein(s):''' |
=== Extended information on the protein === | === Extended information on the protein === | ||
| Line 89: | Line 89: | ||
=== Additional information=== | === Additional information=== | ||
| − | |||
| + | required for the processing of the ''[[gapA]]'' operon mRNA | ||
=Expression and regulation= | =Expression and regulation= | ||
Revision as of 10:12, 9 January 2009
- Description: required for the processing of the gapA operon mRNA
| Gene name | rny |
| Synonyms | ymdA |
| Essential | yes |
| Product | |
| Function | required for the processing of the gapA operon mRNA |
| MW, pI | 58,7 kDa, 5.39 |
| Gene length, protein length | 1560 bp, 520 amino acids |
| Immediate neighbours | pdbX, ymdB |
| Gene sequence (+200bp) | Protein sequence |
| Genetic context File:GenE context.gif | |
Contents
The gene
Basic information
- Coordinates:
Phenotypes of a mutant
Database entries
- DBTBS entry:
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity: required for the processing of the gapA operon mRNA
- Protein family: 2',3' cyclic nucleotide phosphodiesterase family
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- transmembrane domain (4–24)
- KH domain (210–273)
- HD domain (336–429)
- Modification:
- Cofactor(s): metal-dependent
- Effectors of protein activity:
- Interactions:
- Localization: Single-pass membrane protein
Database entries
- Structure:
- Swiss prot entry: [2]
- KEGG entry: [3]
- E.C. number: [4]
Additional information
required for the processing of the gapA operon mRNA
Expression and regulation
- Operon:
- Sigma factor:
- Regulation:
- Regulatory mechanism:
- Additional information:
Biological materials
Labs working on this gene/protein
Jörg Stülke, University of Göttingen, Germany Homepage
Your additional remarks
References
- Commichau, F. M., Rothe, F. M., Herzberg, C., Wagner, E., Hellwig, D., Lehnik-Habrink, M., Hammer, E., Völker, U. & Stülke, J. Novel activities of glycolytic enzymes in Bacillus subtilis: Interactions with essential proteins involved in mRNA processing. subm.
- Hunt, A., Rawlins, J. P., Thomaides, H. B., and Errington, J. (2006) Functional analysis of 11 putative essential genes in Bacillus subtilis. Microbiology 152, 2895-2907. PubMed
