Difference between revisions of "Rnr"
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|style="background:#ABCDEF;" align="center"|'''Function''' || nonspecific degradation of rRNA | |style="background:#ABCDEF;" align="center"|'''Function''' || nonspecific degradation of rRNA | ||
|- | |- | ||
| − | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http:// | + | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU33610 rnr] |
|- | |- | ||
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 88 kDa, 5.703 | |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 88 kDa, 5.703 | ||
| Line 22: | Line 22: | ||
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[smpB]]'', ''[[yvaK]]'' | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[smpB]]'', ''[[yvaK]]'' | ||
|- | |- | ||
| − | | | + | |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU33610 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU33610 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU33610 Advanced_DNA] |
|- | |- | ||
|colspan="2" | '''Genetic context''' <br/> [[Image:rnr_context.gif]] | |colspan="2" | '''Genetic context''' <br/> [[Image:rnr_context.gif]] | ||
Revision as of 13:51, 13 May 2013
- Description: RNase R
| Gene name | rnr |
| Synonyms | yvaJ |
| Essential | no |
| Product | exoribonuclease RNase R (EC 3.1.-.-) |
| Function | nonspecific degradation of rRNA |
| Gene expression levels in SubtiExpress: rnr | |
| MW, pI | 88 kDa, 5.703 |
| Gene length, protein length | 2337 bp, 779 aa |
| Immediate neighbours | smpB, yvaK |
| Sequences | Protein DNA Advanced_DNA |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
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Contents
Categories containing this gene/protein
biosynthesis/ acquisition of nucleotides, Rnases
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU33610
Phenotypes of a mutant
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity: 3'-5'-exoribonuclease
- Protein family: ribonuclease II (RNB) family (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- Structure:
- UniProt: O32231
- KEGG entry: [2]
- E.C. number:
Additional information
Expression and regulation
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
David Bechhofer, Mount Sinai School, New York, USA Homepage
Your additional remarks
References
