Difference between revisions of "RhgR"

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m (Jstuelk moved page YesS to RhgR: 24391637)
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* '''Description:''' transcriptional activator (AraC family) of the rhamnogalacturonan operon  <br/><br/>
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* '''Description:''' transcriptional activator ([[transcription factors of the AraC family|AraC family]]) of the rhamnogalacturonan operon  <br/><br/>
 
{| align="right" border="1" cellpadding="2"  
 
{| align="right" border="1" cellpadding="2"  
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"|'''Gene name'''
 
|style="background:#ABCDEF;" align="center"|'''Gene name'''
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|''yesS''
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|''rhgR''
 
|-
 
|-
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|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
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|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''yesS ''
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"| '''Essential''' || no  
 
|style="background:#ABCDEF;" align="center"| '''Essential''' || no  
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|style="background:#ABCDEF;" align="center"|'''Function''' || regulation of pectin utilization
 
|style="background:#ABCDEF;" align="center"|'''Function''' || regulation of pectin utilization
 
|-
 
|-
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU07010 yesS]
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU07010 rhgR]
 
|-
 
|-
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=YesS YesS]
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=RhgR RhgR]
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 87 kDa, 7.77   
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 87 kDa, 7.77   
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|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 2283 bp, 761 aa  
 
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 2283 bp, 761 aa  
 
|-
 
|-
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yesR]]'', ''[[yesT]]''
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[rhiN]]'', ''[[yesT]]''
 
|-
 
|-
 
|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU07010 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU07010 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU07010 DNA_with_flanks]
 
|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU07010 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU07010 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU07010 DNA_with_flanks]
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= This gene is a member of the following [[regulons]] =
 
= This gene is a member of the following [[regulons]] =
−
{{SubtiWiki regulon|[[YesS regulon]]}}
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{{SubtiWiki regulon|[[RhgR regulon]]}}
  
−
=The [[YesS regulon]]:=
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=The [[RhgR regulon]]:=
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* ''[[yesS]]-[[yesT]]-[[yesU]]-[[yesV]]-[[yesW]]-[[yesX]]-[[yesY]]-[[yesZ]]''  
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* ''[[rhgR]]-[[yesT]]-[[yesU]]-[[yesV]]-[[yesW]]-[[yesX]]-[[yesY]]-[[yesZ]]''  
 
=The gene=
 
=The gene=
  
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* '''[[SubtInteract|Interactions]]:'''  
 
* '''[[SubtInteract|Interactions]]:'''  
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** [[YesS]] is a member of a suspected group of hubs proteins that were suggested to be involved in a large number of [[SubtInteract|interactions]] {{PubMed|21630458}}
+
** [[RhgR]] is a member of a suspected group of hubs proteins that were suggested to be involved in a large number of [[SubtInteract|interactions]] {{PubMed|21630458}}
−
** [[PtsH|HPr(His)-P]]-[[YesS]] {{PubMed|19651770}}
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** [[PtsH|HPr(His)-P]]-[[RhgR]] {{PubMed|19651770}}
  
 
* '''[[Localization]]:''' cell membrane (according to Swiss-Prot)
 
* '''[[Localization]]:''' cell membrane (according to Swiss-Prot)
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=Expression and regulation=
 
=Expression and regulation=
  
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* '''Operon:''' ''[[yesS]]-[[yesT]]-[[yesU]]-[[yesV]]-[[yesW]]-[[yesX]]-[[yesY]]-[[yesZ]]'' {{PubMed|19651770}}
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* '''Operon:''' ''[[rhgR]]-[[yesT]]-[[yesU]]-[[yesV]]-[[yesW]]-[[yesX]]-[[yesY]]-[[yesZ]]'' {{PubMed|19651770}}
  
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* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yesS_765838_768123_1 yesS] {{PubMed|22383849}}
+
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yesS_765838_768123_1 rhgR] {{PubMed|22383849}}
  
 
* '''[[Sigma factor]]:'''  
 
* '''[[Sigma factor]]:'''  
  
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* '''Regulation:''' induced by pectin ([[YesS]]) {{PubMed|19651770}}
+
* '''Regulation:''' induced by pectin ([[RhgR]]) {{PubMed|19651770}}
 
   
 
   
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* '''Regulatory mechanism:''' [[YesS]]: transcriptional activation {{PubMed|19651770}}
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* '''Regulatory mechanism:''' [[RhgR]]: transcriptional activation {{PubMed|19651770}}
  
 
* '''Additional information:'''
 
* '''Additional information:'''

Revision as of 16:54, 7 June 2014

  • Description: transcriptional activator (AraC family) of the rhamnogalacturonan operon

Gene name rhgR
Synonyms yesS
Essential no
Product transcriptional activator of the rhamnogalacturonan operon
Function regulation of pectin utilization
Gene expression levels in SubtiExpress: rhgR
Interactions involving this protein in SubtInteract: RhgR
MW, pI 87 kDa, 7.77
Gene length, protein length 2283 bp, 761 aa
Immediate neighbours rhiN, yesT
Sequences Protein DNA DNA_with_flanks
Genetic context
YesS context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YesS expression.png















Categories containing this gene/protein

utilization of specific carbon sources, transcription factors and their control, membrane proteins

This gene is a member of the following regulons

RhgR regulon

The RhgR regulon:

The gene

Basic information

  • Locus tag: BSU07010

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Modification:
  • Effectors of protein activity: interaction with HPr(His)-P (occurs in the absence of preferred carbon sources) stimulates YesS activity PubMed

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Regulatory mechanism: RhgR: transcriptional activation PubMed
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Irina A Rodionova, Xiaoqing Li, Vera Thiel, Sergey Stolyar, Krista Stanton, James K Fredrickson, Donald A Bryant, Andrei L Osterman, Aaron A Best, Dmitry A Rodionov
Comparative genomics and functional analysis of rhamnose catabolic pathways and regulons in bacteria.
Front Microbiol: 2013, 4;407
[PubMed:24391637] [WorldCat.org] [DOI] (P e)

Elodie Marchadier, Rut Carballido-López, Sophie Brinster, Céline Fabret, Peggy Mervelet, Philippe Bessières, Marie-Françoise Noirot-Gros, Vincent Fromion, Philippe Noirot
An expanded protein-protein interaction network in Bacillus subtilis reveals a group of hubs: Exploration by an integrative approach.
Proteomics: 2011, 11(15);2981-91
[PubMed:21630458] [WorldCat.org] [DOI] (I p)

Sandrine Poncet, Maryline Soret, Peggy Mervelet, Josef Deutscher, Philippe Noirot
Transcriptional activator YesS is stimulated by histidine-phosphorylated HPr of the Bacillus subtilis phosphotransferase system.
J Biol Chem: 2009, 284(41);28188-28197
[PubMed:19651770] [WorldCat.org] [DOI] (I p)

Akihito Ochiai, Takafumi Itoh, Akiko Kawamata, Wataru Hashimoto, Kousaku Murata
Plant cell wall degradation by saprophytic Bacillus subtilis strains: gene clusters responsible for rhamnogalacturonan depolymerization.
Appl Environ Microbiol: 2007, 73(12);3803-13
[PubMed:17449691] [WorldCat.org] [DOI] (P p)

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