Difference between revisions of "RhgR"

From SubtiWiki
Jump to: navigation, search
Line 36: Line 36:
 
<br/><br/><br/><br/>
 
<br/><br/><br/><br/>
 
<br/><br/><br/><br/>
 
<br/><br/><br/><br/>
<br/><br/><br/><br/>
 
<br/><br/><br/><br/>
 
 
 
 
<br/><br/>
 
<br/><br/>
  
Line 82: Line 78:
 
* '''Kinetic information:'''
 
* '''Kinetic information:'''
  
* '''Domains:'''  [[PtsH|HPr]]-binding domain: aa 406 - 510 {{PubMed|19651770}}
+
* '''[[Domains]]:'''  [[PtsH|HPr]]-binding domain: aa 406 - 510 {{PubMed|19651770}}
  
 
* '''Modification:'''
 
* '''Modification:'''
  
* '''Cofactor(s):'''
+
* '''[[Cofactors]]:'''
  
 
* '''Effectors of protein activity:''' interaction with [[PtsH|HPr(His)-P]] (occurs in the absence of preferred carbon sources) stimulates YesS activity {{PubMed|19651770}}
 
* '''Effectors of protein activity:''' interaction with [[PtsH|HPr(His)-P]] (occurs in the absence of preferred carbon sources) stimulates YesS activity {{PubMed|19651770}}
Line 114: Line 110:
 
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yesS_765838_768123_1 yesS] {{PubMed|22383849}}
 
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yesS_765838_768123_1 yesS] {{PubMed|22383849}}
  
* '''Sigma factor:'''  
+
* '''[[Sigma factor]]:'''  
  
 
* '''Regulation:''' induced by pectin ([[YesS]]) {{PubMed|19651770}}
 
* '''Regulation:''' induced by pectin ([[YesS]]) {{PubMed|19651770}}
Line 141: Line 137:
  
 
=References=
 
=References=
<pubmed> 19651770 17449691 21630458</pubmed>
+
<pubmed> 19651770 17449691 21630458 24391637 </pubmed>
  
 
[[Category:Protein-coding genes]]
 
[[Category:Protein-coding genes]]

Revision as of 13:17, 7 January 2014

  • Description: transcriptional activator (AraC family) of the rhamnogalacturonan operon

Gene name yesS
Synonyms
Essential no
Product transcriptional activator of the rhamnogalacturonan operon
Function regulation of pectin utilization
Gene expression levels in SubtiExpress: yesS
Interactions involving this protein in SubtInteract: YesS
MW, pI 87 kDa, 7.77
Gene length, protein length 2283 bp, 761 aa
Immediate neighbours yesR, yesT
Sequences Protein DNA DNA_with_flanks
Genetic context
YesS context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YesS expression.png















Categories containing this gene/protein

utilization of specific carbon sources, transcription factors and their control, membrane proteins

This gene is a member of the following regulons

YesS regulon

The YesS regulon:

The gene

Basic information

  • Locus tag: BSU07010

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Modification:
  • Effectors of protein activity: interaction with HPr(His)-P (occurs in the absence of preferred carbon sources) stimulates YesS activity PubMed

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Regulatory mechanism: YesS: transcriptional activation PubMed
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References