Difference between revisions of "RemA"

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|style="background:#ABCDEF;" align="center"|'''Function''' || control of [[biofilm formation]]
 
|style="background:#ABCDEF;" align="center"|'''Function''' || control of [[biofilm formation]]
 
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU15670 remA]
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU15670 remA]
 
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/pathways/gene_regulation_nucleotides.html Nucleotides (regulation)]'''
 
|colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/pathways/gene_regulation_nucleotides.html Nucleotides (regulation)]'''
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yloC]]'', ''[[gmk]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yloC]]'', ''[[gmk]]''
 
|-
 
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|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAE01452&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU15670 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU15670 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU15670 Advanced_DNA]
 
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|colspan="2" | '''Genetic context''' <br/> [[Image:ylzA_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:ylzA_context.gif]]

Revision as of 12:47, 13 May 2013

  • Description: involved in the activation of biofilm matrix biosynthetic operons, acts in parallel to SinR, AbrB, and DegU

Gene name remA
Synonyms ylzA
Essential no
Product regulator of the extracellular matrix
Function control of biofilm formation
Gene expression levels in SubtiExpress: remA
Metabolic function and regulation of this protein in SubtiPathways:
Nucleotides (regulation)
MW, pI 9 kDa, 7.178
Gene length, protein length 267 bp, 89 aa
Immediate neighbours yloC, gmk
Sequences Protein DNA Advanced_DNA
Genetic context
YlzA context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
RemA expression.png















Categories containing this gene/protein

biofilm formation, sporulation proteins

This gene is a member of the following regulons

SigF regulon

The gene

Basic information

  • Locus tag: BSU15670

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: UPF0296 family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Operon:
  • Regulation:
    • expressed during vegetative growth and early during sporulation in the forespore (SigF) PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Daniel Kearns, Indiana University, Bloomington, USA, homepage

Your additional remarks

References

Additional publications: PubMed

Ana B Abecasis, Mónica Serrano, Renato Alves, Leonor Quintais, José B Pereira-Leal, Adriano O Henriques
A genomic signature and the identification of new sporulation genes.
J Bacteriol: 2013, 195(9);2101-15
[PubMed:23396918] [WorldCat.org] [DOI] (I p)

Bjorn A Traag, Antonia Pugliese, Jonathan A Eisen, Richard Losick
Gene conservation among endospore-forming bacteria reveals additional sporulation genes in Bacillus subtilis.
J Bacteriol: 2013, 195(2);253-60
[PubMed:23123912] [WorldCat.org] [DOI] (I p)

Jared T Winkelman, Kris M Blair, Daniel B Kearns
RemA (YlzA) and RemB (YaaB) regulate extracellular matrix operon expression and biofilm formation in Bacillus subtilis.
J Bacteriol: 2009, 191(12);3981-91
[PubMed:19363116] [WorldCat.org] [DOI] (I p)