Difference between revisions of "Regulons"

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(DNA-binding regulators)
(RNA switches)
 
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Line 13: Line 13:
 
* [[SigL regulon]], see also [[SigL]]
 
* [[SigL regulon]], see also [[SigL]]
 
* [[SigM regulon]], see also [[SigM]]
 
* [[SigM regulon]], see also [[SigM]]
 +
* [[SigV regulon]], see also [[SigV]]
 
* [[SigW regulon]], see also [[SigW]]
 
* [[SigW regulon]], see also [[SigW]]
 
* [[SigX regulon]], see also [[SigX]]
 
* [[SigX regulon]], see also [[SigX]]
Line 18: Line 19:
 
* [[Xpf regulon]], see also [[Xpf]]
 
* [[Xpf regulon]], see also [[Xpf]]
 
* [[YlaC regulon]], see also [[YlaC]]
 
* [[YlaC regulon]], see also [[YlaC]]
* [[YvrI-YvrHa regulon]], see also [[YvrI]] and [[YvrHa]]
+
* [[SigO-RsoA regulon]], see also [[SigO]] and [[RsoA]]
  
 
= DNA-binding regulators =
 
= DNA-binding regulators =
Line 26: Line 27:
 
* [[AcoR regulon]], see also [[AcoR]]
 
* [[AcoR regulon]], see also [[AcoR]]
 
* [[AdaA regulon]], see also [[AdaA]]
 
* [[AdaA regulon]], see also [[AdaA]]
 +
* [[AdeR regulon]], see also [[AdeR]]
 
* [[AdhR regulon]], see also [[AdhR]]
 
* [[AdhR regulon]], see also [[AdhR]]
 
* [[AhrC regulon]], see also [[AhrC]]
 
* [[AhrC regulon]], see also [[AhrC]]
Line 32: Line 34:
 
* [[AraR regulon]], see also [[AraR]]
 
* [[AraR regulon]], see also [[AraR]]
 
* [[ArsR regulon]], see also [[ArsR]]
 
* [[ArsR regulon]], see also [[ArsR]]
 +
* [[AscR regulon]], see also [[AscR]]
 
* [[AseR regulon]], see also [[AseR]]
 
* [[AseR regulon]], see also [[AseR]]
 
* [[AzlB regulon]], see also [[AzlB]]
 
* [[AzlB regulon]], see also [[AzlB]]
Line 46: Line 49:
 
* [[CcpN regulon]], see also [[CcpN]]
 
* [[CcpN regulon]], see also [[CcpN]]
 
* [[CggR regulon]], see also [[CggR]]
 
* [[CggR regulon]], see also [[CggR]]
 +
* [[ChrS regulon]], see also [[ChrS]]
 
* [[CitR regulon]], see also [[CitR]]
 
* [[CitR regulon]], see also [[CitR]]
 
* [[CitT regulon]], see also [[CitT]]
 
* [[CitT regulon]], see also [[CitT]]
Line 51: Line 55:
 
* [[ComA regulon]], see also [[ComA]]
 
* [[ComA regulon]], see also [[ComA]]
 
* [[ComK regulon]], see also [[ComK]]
 
* [[ComK regulon]], see also [[ComK]]
* [[Cso regulon]], see also [[CsoR]]
 
 
* [[CsoR regulon]], see also [[CsoR]]
 
* [[CsoR regulon]], see also [[CsoR]]
 
* [[CssR regulon]], see also [[CssR]]
 
* [[CssR regulon]], see also [[CssR]]
Line 62: Line 65:
 
* [[DesR regulon]], see also [[DesR]]
 
* [[DesR regulon]], see also [[DesR]]
 
* [[DnaA regulon]], see also [[DnaA]]
 
* [[DnaA regulon]], see also [[DnaA]]
 +
* [[DtrR regulon]], see also [[DtrR]]
 
* [[ExuR regulon]], see also [[ExuR]]
 
* [[ExuR regulon]], see also [[ExuR]]
 
* [[FadR regulon]], see also [[FadR]]
 
* [[FadR regulon]], see also [[FadR]]
Line 67: Line 71:
 
* [[FatR regulon]], see also [[FatR]]
 
* [[FatR regulon]], see also [[FatR]]
 
* [[Fnr regulon]], see also [[Fnr]]
 
* [[Fnr regulon]], see also [[Fnr]]
 +
* [[FrlR regulon]], see also [[FrlR]]
 
* [[FruR regulon]], see also [[FruR]]
 
* [[FruR regulon]], see also [[FruR]]
 
* [[Fur regulon]], see also [[Fur]]
 
* [[Fur regulon]], see also [[Fur]]
 
* [[GabR regulon]], see also [[GabR]]
 
* [[GabR regulon]], see also [[GabR]]
 +
* [[GamR regulon]], see also [[GamR]]
 +
* [[GbsR regulon]], see also [[GbsR]]
 
* [[GerE regulon]], see also [[GerE]]
 
* [[GerE regulon]], see also [[GerE]]
 
* [[GerR regulon]], see also [[GerR]]
 
* [[GerR regulon]], see also [[GerR]]
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* [[HrcA regulon]], see also [[HrcA]]
 
* [[HrcA regulon]], see also [[HrcA]]
 
* [[HxlR regulon]], see also [[HxlR]]
 
* [[HxlR regulon]], see also [[HxlR]]
 +
* [[HypR regulon]], see also [[HypR]]
 
* [[ImmR regulon]], see also [[ImmR]]
 
* [[ImmR regulon]], see also [[ImmR]]
 
* [[IolR regulon]], see also [[IolR]]
 
* [[IolR regulon]], see also [[IolR]]
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* [[LmrA regulon]], see also [[LmrA]]
 
* [[LmrA regulon]], see also [[LmrA]]
 
* [[LutR regulon]], see also [[LutR]]
 
* [[LutR regulon]], see also [[LutR]]
* [[LytR regulon]], see also [[LytR]]
+
* [[LytT regulon]], see also [[LytT]]
 
* [[MalR regulon]], see also [[MalR]]
 
* [[MalR regulon]], see also [[MalR]]
 
* [[ManR regulon]], see also [[ManR]]
 
* [[ManR regulon]], see also [[ManR]]
 
* [[MdtR regulon]], see also [[MdtR]]
 
* [[MdtR regulon]], see also [[MdtR]]
 +
* [[MgsR regulon]], see also [[MgsR]]
 
* [[MhqR regulon]], see also [[MhqR]]
 
* [[MhqR regulon]], see also [[MhqR]]
 
* [[MntR regulon]], see also [[MntR]]
 
* [[MntR regulon]], see also [[MntR]]
Line 102: Line 111:
 
* [[MtlR regulon]], see also [[MtlR]]
 
* [[MtlR regulon]], see also [[MtlR]]
 
* [[NadR regulon]], see also [[NadR]]
 
* [[NadR regulon]], see also [[NadR]]
 +
* [[NagR regulon]], see also [[NagR]]
 
* [[NatR regulon]], see also [[NatR]]
 
* [[NatR regulon]], see also [[NatR]]
 +
* [[NrdR regulon]], see also [[NrdR]]
 
* [[NsrR regulon]], see also [[NsrR]]
 
* [[NsrR regulon]], see also [[NsrR]]
 
* [[NtdR regulon]], see also [[NtdR]]
 
* [[NtdR regulon]], see also [[NtdR]]
 
* [[OhrR regulon]], see also [[OhrR]]
 
* [[OhrR regulon]], see also [[OhrR]]
 +
* [[OpcR regulon]], see also [[OpcR]]
 
* [[PadR regulon]], see also [[PadR]]
 
* [[PadR regulon]], see also [[PadR]]
 +
* [[PchR regulon]], see also [[YvmB]]
 
* [[PerR regulon]], see also [[PerR]]
 
* [[PerR regulon]], see also [[PerR]]
 
* [[PhoP regulon]], see also [[PhoP]]
 
* [[PhoP regulon]], see also [[PhoP]]
 +
* [[PsdR regulon]], see also [[PsdR]]
 
* [[PucR regulon]], see also [[PucR]]
 
* [[PucR regulon]], see also [[PucR]]
 
* [[PurR regulon]], see also [[PurR]]
 
* [[PurR regulon]], see also [[PurR]]
 +
* [[PutR regulon]], see also [[PutR]]
 +
* [[QdoR regulon]], see also [[QdoR]]
 +
* [[RemA regulon]], see also [[RemA]]
 
* [[ResD regulon]], see also [[ResD]]
 
* [[ResD regulon]], see also [[ResD]]
 
* [[Rex regulon]], see also [[Rex]]
 
* [[Rex regulon]], see also [[Rex]]
 
* [[RghR regulon]], see also [[RghR]]
 
* [[RghR regulon]], see also [[RghR]]
 +
* [[RhaR regulon]], see also [[RhaR]]
 +
* [[RhgR regulon]], see also [[RhgR]]
 
* [[RocR regulon]], see also [[RocR]]
 
* [[RocR regulon]], see also [[RocR]]
 
* [[Rok regulon]], see also [[Rok]]
 
* [[Rok regulon]], see also [[Rok]]
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* [[SenS regulon]], see also [[SenS]]
 
* [[SenS regulon]], see also [[SenS]]
 
* [[SinR regulon]], see also [[SinR]]
 
* [[SinR regulon]], see also [[SinR]]
 +
* [[SknR regulon]], see also [[SknR]]
 
* [[SlrR regulon]], see also [[SlrR]]
 
* [[SlrR regulon]], see also [[SlrR]]
 
* [[Spo0A regulon]], see also [[Spo0A]]
 
* [[Spo0A regulon]], see also [[Spo0A]]
 
* [[SpoIIID regulon]], see also [[SpoIIID]]
 
* [[SpoIIID regulon]], see also [[SpoIIID]]
 +
* [[SpoVT regulon]], see also [[SpoVT]]
 
* [[Spx regulon]], see also [[Spx]]
 
* [[Spx regulon]], see also [[Spx]]
 +
* [[TilS-HprT regulon]], see also [[TilS]], [[HprT]]
 +
* [[ThrR regulon]], see also [[ThrR]]
 
* [[TnrA regulon]], see also [[TnrA]]
 
* [[TnrA regulon]], see also [[TnrA]]
 
* [[TreR regulon]], see also [[TreR]]
 
* [[TreR regulon]], see also [[TreR]]
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* [[Xre regulon]], see also [[Xre]]
 
* [[Xre regulon]], see also [[Xre]]
 
* [[XylR regulon]], see also [[XylR]]
 
* [[XylR regulon]], see also [[XylR]]
 +
 
* [[YcbG regulon]], see also [[YcbG]]
 
* [[YcbG regulon]], see also [[YcbG]]
 
* [[YclJ regulon]], see also [[YclJ]]
 
* [[YclJ regulon]], see also [[YclJ]]
 
* [[YcnK regulon]], see also [[YcnK]]
 
* [[YcnK regulon]], see also [[YcnK]]
 
* [[YdfI regulon]], see also [[YdfI]]
 
* [[YdfI regulon]], see also [[YdfI]]
* [[YesS regulon]], see also [[YesS]]
+
 
 
* [[YetL regulon]], see also [[YetL]]
 
* [[YetL regulon]], see also [[YetL]]
 
* [[YfhP regulon]], see also [[YfhP]]
 
* [[YfhP regulon]], see also [[YfhP]]
 +
* [[YfiK regulon]], see also [[YfiK]]
 
* [[YfmP regulon]], see also [[YfmP]]
 
* [[YfmP regulon]], see also [[YfmP]]
* [[YkrP regulon]], see also [[YkrP]]
+
* [[YkrK regulon]], see also [[YkrK]]
* [[YodB regulon]], see also [[YobB]]
+
* [[YodB regulon]], see also [[YodB]]
 
* [[YofA regulon]], see also [[YofA]]
 
* [[YofA regulon]], see also [[YofA]]
 
* [[YrkP regulon]], see also [[YrkP]]
 
* [[YrkP regulon]], see also [[YrkP]]
* [[YtlI regulon]], see also [[YtlI]]
 
 
* [[YtrA regulon]], see also [[YtrA]]
 
* [[YtrA regulon]], see also [[YtrA]]
* [[YvoA regulon]], see also [[YvoA]]
 
 
* [[YvrHb regulon]], see also [[YvrHb]]
 
* [[YvrHb regulon]], see also [[YvrHb]]
 +
* [[YwbI regulon]], see also [[YwbI]]
 
* [[YwcC regulon]], see also [[YwcC]]
 
* [[YwcC regulon]], see also [[YwcC]]
* [[YxaF regulon]], see also [[YxaF]]
 
 
* [[YxdJ regulon]], see also [[YxdJ]]
 
* [[YxdJ regulon]], see also [[YxdJ]]
 
* [[Zur regulon]], see also [[Zur]]
 
* [[Zur regulon]], see also [[Zur]]
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* [[A-box]]
 
* [[A-box]]
 +
* [[B12 riboswitch]]
 
* [[EAR riboswitch]]
 
* [[EAR riboswitch]]
 
* [[FMN-box]]
 
* [[FMN-box]]
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* [[glmS ribozyme]]
 
* [[glmS ribozyme]]
 
* [[GlpP regulon]], see also [[GlpP]]
 
* [[GlpP regulon]], see also [[GlpP]]
 +
* [[Gly-box]]
 
* [[HutP regulon]], see also [[HutP]]
 
* [[HutP regulon]], see also [[HutP]]
 
* [[L-box]]
 
* [[L-box]]
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* [[TRAP regulon]], see also [[MtrB]]
 
* [[TRAP regulon]], see also [[MtrB]]
 
* [[YdaO riboswitch]]
 
* [[YdaO riboswitch]]
 +
* [[YkkC riboswitch]]
 +
* [[yybP-ykoY motif]]
 
* [[RNA switch/ other]]
 
* [[RNA switch/ other]]
 +
 +
= [[RNases]] =
 +
* [[RNase III targets]]
 +
* [[RNase Y targets]]
  
 
= Additional regulatory mechanisms =
 
= Additional regulatory mechanisms =
 
+
* [[BmrB regulon]], see also [[BmrB]]
 
* [[CitB regulon]], see also [[CitB]]
 
* [[CitB regulon]], see also [[CitB]]
 
* [[ComN regulon]], see also [[ComN]]
 
* [[ComN regulon]], see also [[ComN]]
 
* [[CsrA regulon]], see also [[CsrA]]
 
* [[CsrA regulon]], see also [[CsrA]]
 +
* [[FbpB regulon]], see also ''[[FbpB]]''
 
* [[fsrA regulon]], see also ''[[fsrA]]''
 
* [[fsrA regulon]], see also ''[[fsrA]]''
 +
* [[Kre regulon]], see also [[Kre]]
 
* [[MifM regulon]], see also [[MifM]]
 
* [[MifM regulon]], see also [[MifM]]
 +
* [[as-bsrH regulon]], see also ''[[as-bsrH]]''
 +
* [[as-yonT regulon]], see also ''[[as-yonT]]''
 
* [[ratA regulon]], see also ''[[ratA]]''
 
* [[ratA regulon]], see also ''[[ratA]]''
 +
* [[RoxS regulon]], see also [[RoxS]]
 
* [[SR1 regulon]], see also [[sr1]]
 
* [[SR1 regulon]], see also [[sr1]]
 
* [[Stringent response]]
 
* [[Stringent response]]
 +
 +
=Key publications=
 +
<pubmed> 22235300 </pubmed>

Latest revision as of 09:13, 22 December 2016

Overview on the regulons in B. subtilis

Sigma factors

DNA-binding regulators

RNA switches

RNases

Additional regulatory mechanisms

Key publications

Han Zhang, Yanbin Yin, Victor Olman, Ying Xu
Genomic arrangement of regulons in bacterial genomes.
PLoS One: 2012, 7(1);e29496
[PubMed:22235300] [WorldCat.org] [DOI] (I p)