Difference between revisions of "Regulons"

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= [[Sigma factors]] =
 
= [[Sigma factors]] =
  
* [[SigB regulon]]
+
* [[SigB regulon]], see also [[SigB]]
* [[SigD regulon]]
+
* [[SigD regulon]], see also [[SigD]]
* [[SigE regulon]]
+
* [[SigE regulon]], see also [[SigE]]
* [[SigF regulon]]
+
* [[SigF regulon]], see also [[SigF]]
* [[SigG regulon]]
+
* [[SigG regulon]], see also [[SigG]]
* [[SigH regulon]]
+
* [[SigH regulon]], see also [[SigH]]
* [[SigI regulon]]
+
* [[SigI regulon]], see also [[SigI]]
* [[SigK regulon]]
+
* [[SigK regulon]], see also [[SigK]]
* [[SigL regulon]]
+
* [[SigL regulon]], see also [[SigL]]
* [[SigM regulon]]
+
* [[SigM regulon]], see also [[SigM]]
* [[SigW regulon]]
+
* [[SigV regulon]], see also [[SigV]]
* [[SigX regulon]]
+
* [[SigW regulon]], see also [[SigW]]
* [[SigY regulon]]
+
* [[SigX regulon]], see also [[SigX]]
* [[Xpf regulon]]
+
* [[SigY regulon]], see also [[SigY]]
* [[YlaC regulon]]
+
* [[Xpf regulon]], see also [[Xpf]]
* [[YvrI-YvrHa regulon]]
+
* [[YlaC regulon]], see also [[YlaC]]
 +
* [[SigO-RsoA regulon]], see also [[SigO]] and [[RsoA]]
  
 
= DNA-binding regulators =
 
= DNA-binding regulators =
  
* [[Abh regulon]]
+
* [[Abh regulon]], see also [[Abh]]
* [[AbrB regulon]]
+
* [[AbrB regulon]], see also [[AbrB]]
* [[AcoR regulon]]
+
* [[AcoR regulon]], see also [[AcoR]]
* [[AdaA regulon]]
+
* [[AdaA regulon]], see also [[AdaA]]
* [[AdhR regulon]]
+
* [[AdeR regulon]], see also [[AdeR]]
* [[AhrC regulon]]
+
* [[AdhR regulon]], see also [[AdhR]]
* [[AlsR regulon]]
+
* [[AhrC regulon]], see also [[AhrC]]
* [[AnsR regulon]]
+
* [[AlsR regulon]], see also [[AlsR]]
* [[AraR regulon]]
+
* [[AnsR regulon]], see also [[AnsR]]
* [[ArsR regulon]]
+
* [[AraR regulon]], see also [[AraR]]
* [[AseR regulon]]
+
* [[ArsR regulon]], see also [[ArsR]]
* [[AzlB regulon]]
+
* [[AscR regulon]], see also [[AscR]]
* [[BceR regulon]]
+
* [[AseR regulon]], see also [[AseR]]
* [[BirA regulon]]
+
* [[AzlB regulon]], see also [[AzlB]]
* [[BkdR regulon]]
+
* [[BceR regulon]], see also [[BceR]]
* [[BltR regulon]]
+
* [[BirA regulon]], see also [[BirA]]
* [[BmrR regulon]]
+
* [[BkdR regulon]], see also [[BkdR]]
* [[BsdA regulon]]
+
* [[BltR regulon]], see also [[BltR]]
* [[Btr regulon]]
+
* [[BmrR regulon]], see also [[BmrR]]
* [[CatR regulon]]
+
* [[BsdA regulon]], see also [[BsdA]]
* [[CcpA regulon]]
+
* [[Btr regulon]], see also [[Btr]]
* [[CcpC regulon]]
+
* [[CatR regulon]], see also [[CatR]]
* [[CcpN regulon]]
+
* [[CcpA regulon]], see also [[CcpA]]
* [[CggR regulon]]
+
* [[CcpC regulon]], see also [[CcpC]]
* [[CitR regulon]]
+
* [[CcpN regulon]], see also [[CcpN]]
* [[CitT regulon]]
+
* [[CggR regulon]], see also [[CggR]]
* [[CodY regulon]]
+
* [[ChrS regulon]], see also [[ChrS]]
* [[ComA regulon]]
+
* [[CitR regulon]], see also [[CitR]]
* [[ComK regulon]]
+
* [[CitT regulon]], see also [[CitT]]
* [[Cso regulon]]
+
* [[CodY regulon]], see also [[CodY]]
* [[CsoR regulon]]
+
* [[ComA regulon]], see also [[ComA]]
* [[CssR regulon]]
+
* [[ComK regulon]], see also [[ComK]]
* [[CtsR regulon]]
+
* [[CsoR regulon]], see also [[CsoR]]
* [[CymR regulon]]
+
* [[CssR regulon]], see also [[CssR]]
* [[CysL regulon]]
+
* [[CtsR regulon]], see also [[CtsR]]
* [[CzrA regulon]]
+
* [[CymR regulon]], see also [[CymR]]
* [[DegU regulon]]
+
* [[CysL regulon]], see also [[CysL]]
* [[DeoR regulon]]
+
* [[CzrA regulon]], see also [[CzrA]]
* [[DesR regulon]]
+
* [[DegU regulon]], see also [[DegU]]
* [[DnaA regulon]]
+
* [[DeoR regulon]], see also [[DeoR]]
* [[ExuR regulon]]
+
* [[DesR regulon]], see also [[DesR]]
* [[FadR regulon]]
+
* [[DnaA regulon]], see also [[DnaA]]
* [[FapR regulon]]
+
* [[DtrR regulon]], see also [[DtrR]]
* [[FatR regulon]]
+
* [[ExuR regulon]], see also [[ExuR]]
* [[Fnr regulon]]
+
* [[FadR regulon]], see also [[FadR]]
* [[FruR regulon]]
+
* [[FapR regulon]], see also [[FapR]]
* [[Fur regulon]]
+
* [[FatR regulon]], see also [[FatR]]
* [[GabR regulon]]
+
* [[Fnr regulon]], see also [[Fnr]]
* [[GerE regulon]]
+
* [[FrlR regulon]], see also [[FrlR]]
* [[GerR regulon]]
+
* [[FruR regulon]], see also [[FruR]]
* [[GlnL regulon]]
+
* [[Fur regulon]], see also [[Fur]]
* [[GlnR regulon]]
+
* [[GabR regulon]], see also [[GabR]]
* [[GltC regulon]]
+
* [[GamR regulon]], see also [[GamR]]
* [[GltR regulon]]
+
* [[GbsR regulon]], see also [[GbsR]]
* [[GlvR regulon]]
+
* [[GerE regulon]], see also [[GerE]]
* [[GmuR regulon]]
+
* [[GerR regulon]], see also [[GerR]]
* [[GntR regulon]]
+
* [[GlnL regulon]], see also [[GlnL]]
* [[GutR regulon]]
+
* [[GlnR regulon]], see also [[GlnR]]
* [[HrcA regulon]]
+
* [[GltC regulon]], see also [[GltC]]
* [[HxlR regulon]]
+
* [[GltR regulon]], see also [[GltR]]
* [[ImmR regulon]]
+
* [[GlvR regulon]], see also [[GlvR]]
* [[IolR regulon]]
+
* [[GmuR regulon]], see also [[GmuR]]
* [[KdgR regulon]]
+
* [[GntR regulon]], see also [[GntR]]
* [[KipR regulon]]
+
* [[GutR regulon]], see also [[GutR]]
* [[LacR regulon]]
+
* [[HrcA regulon]], see also [[HrcA]]
* [[LevR regulon]]
+
* [[HxlR regulon]], see also [[HxlR]]
* [[LexA regulon]]
+
* [[HypR regulon]], see also [[HypR]]
* [[LiaR regulon]]
+
* [[ImmR regulon]], see also [[ImmR]]
* [[LicR regulon]]
+
* [[IolR regulon]], see also [[IolR]]
* [[LmrA regulon]]
+
* [[KdgR regulon]], see also [[KdgR]]
* [[LutR regulon]]
+
* [[KipR regulon]], see also [[KipR]]
* [[LytR regulon]]
+
* [[LacR regulon]], see also [[LacR]]
* [[MalR regulon]]
+
* [[LevR regulon]], see also [[LevR]]
* [[ManR regulon]]
+
* [[LexA regulon]], see also [[LexA]]
* [[MdtR regulon]]
+
* [[LiaR regulon]], see also [[LiaR]]
* [[MhqR regulon]]
+
* [[LicR regulon]], see also [[LicR]]
* [[MntR regulon]]
+
* [[LmrA regulon]], see also [[LmrA]]
* [[Mta regulon]]
+
* [[LutR regulon]], see also [[LutR]]
* [[MsmR regulon]]
+
* [[LytT regulon]], see also [[LytT]]
* [[MtlR regulon]]
+
* [[MalR regulon]], see also [[MalR]]
* [[NadR regulon]]
+
* [[ManR regulon]], see also [[ManR]]
* [[NatR regulon]]
+
* [[MdtR regulon]], see also [[MdtR]]
* [[NsrR regulon]]
+
* [[MgsR regulon]], see also [[MgsR]]
* [[NtdR regulon]]
+
* [[MhqR regulon]], see also [[MhqR]]
* [[OhrR regulon]]
+
* [[MntR regulon]], see also [[MntR]]
* [[PadR regulon]]
+
* [[Mta regulon]], see also [[Mta]]
* [[PerR regulon]]
+
* [[MtlR regulon]], see also [[MtlR]]
* [[PhoP regulon]]
+
* [[NadR regulon]], see also [[NadR]]
* [[PucR regulon]]
+
* [[NagR regulon]], see also [[NagR]]
* [[PurR regulon]]
+
* [[NatR regulon]], see also [[NatR]]
* [[ResD regulon]]
+
* [[NrdR regulon]], see also [[NrdR]]
* [[Rex regulon]]
+
* [[NsrR regulon]], see also [[NsrR]]
* [[RghR regulon]]
+
* [[NtdR regulon]], see also [[NtdR]]
* [[RocR regulon]]
+
* [[OhrR regulon]], see also [[OhrR]]
* [[Rok regulon]]
+
* [[OpcR regulon]], see also [[OpcR]]
* [[RsfA regulon]]
+
* [[PadR regulon]], see also [[PadR]]
* [[SalA regulon]]
+
* [[PchR regulon]], see also [[YvmB]]
* [[ScoC regulon]]
+
* [[PerR regulon]], see also [[PerR]]
* [[SdpR regulon]]
+
* [[PhoP regulon]], see also [[PhoP]]
* [[SenS regulon]]
+
* [[PsdR regulon]], see also [[PsdR]]
* [[SinR regulon]]
+
* [[PucR regulon]], see also [[PucR]]
* [[SlrR regulon]]
+
* [[PurR regulon]], see also [[PurR]]
* [[Spo0A regulon]]
+
* [[PutR regulon]], see also [[PutR]]
* [[SpoIIID regulon]]
+
* [[QdoR regulon]], see also [[QdoR]]
* [[Spx regulon]]
+
* [[RemA regulon]], see also [[RemA]]
* [[TnrA regulon]]
+
* [[ResD regulon]], see also [[ResD]]
* [[TreR regulon]]
+
* [[Rex regulon]], see also [[Rex]]
* [[WalR regulon]]
+
* [[RghR regulon]], see also [[RghR]]
* [[Xre regulon]]
+
* [[RhaR regulon]], see also [[RhaR]]
* [[XylR regulon]]
+
* [[RhgR regulon]], see also [[RhgR]]
* [[YcbG regulon]]
+
* [[RocR regulon]], see also [[RocR]]
* [[YclJ regulon]]
+
* [[Rok regulon]], see also [[Rok]]
* [[YcnK regulon]]
+
* [[RsfA regulon]], see also [[RsfA]]
* [[YdfI regulon]]
+
* [[SalA regulon]], see also [[SalA]]
* [[YesS regulon]]
+
* [[ScoC regulon]], see also [[ScoC]]
* [[YetL regulon]]
+
* [[SdpR regulon]], see also [[SdpR]]
* [[YfhP regulon]]
+
* [[SenS regulon]], see also [[SenS]]
* [[YfmP regulon]]
+
* [[SinR regulon]], see also [[SinR]]
* [[YkrP regulon]]
+
* [[SknR regulon]], see also [[SknR]]
* [[YodB regulon]]
+
* [[SlrR regulon]], see also [[SlrR]]
* [[YofA regulon]]
+
* [[Spo0A regulon]], see also [[Spo0A]]
* [[YrkP regulon]]
+
* [[SpoIIID regulon]], see also [[SpoIIID]]
* [[YtlI regulon]]
+
* [[SpoVT regulon]], see also [[SpoVT]]
* [[YtrA regulon]]
+
* [[Spx regulon]], see also [[Spx]]
* [[YvoA regulon]]
+
* [[TilS-HprT regulon]], see also [[TilS]], [[HprT]]
* [[YvrHb regulon]]
+
* [[ThrR regulon]], see also [[ThrR]]
* [[YwcC regulon]]
+
* [[TnrA regulon]], see also [[TnrA]]
* [[YxaF regulon]]
+
* [[TreR regulon]], see also [[TreR]]
* [[YxdJ regulon]]
+
* [[WalR regulon]], see also [[WalR]]
* [[Zur regulon]]
+
* [[Xre regulon]], see also [[Xre]]
 +
* [[XylR regulon]], see also [[XylR]]
 +
 
 +
* [[YcbG regulon]], see also [[YcbG]]
 +
* [[YclJ regulon]], see also [[YclJ]]
 +
* [[YcnK regulon]], see also [[YcnK]]
 +
* [[YdfI regulon]], see also [[YdfI]]
 +
 
 +
* [[YetL regulon]], see also [[YetL]]
 +
* [[YfhP regulon]], see also [[YfhP]]
 +
* [[YfiK regulon]], see also [[YfiK]]
 +
* [[YfmP regulon]], see also [[YfmP]]
 +
* [[YkrK regulon]], see also [[YkrK]]
 +
* [[YodB regulon]], see also [[YodB]]
 +
* [[YofA regulon]], see also [[YofA]]
 +
* [[YrkP regulon]], see also [[YrkP]]
 +
* [[YtrA regulon]], see also [[YtrA]]
 +
* [[YvrHb regulon]], see also [[YvrHb]]
 +
* [[YwbI regulon]], see also [[YwbI]]
 +
* [[YwcC regulon]], see also [[YwcC]]
 +
* [[YxdJ regulon]], see also [[YxdJ]]
 +
* [[Zur regulon]], see also [[Zur]]
  
 
= [[RNA switch|RNA switches]] =
 
= [[RNA switch|RNA switches]] =
  
 
* [[A-box]]
 
* [[A-box]]
 +
* [[B12 riboswitch]]
 
* [[EAR riboswitch]]
 
* [[EAR riboswitch]]
 
* [[FMN-box]]
 
* [[FMN-box]]
 
* [[G-box]]
 
* [[G-box]]
* [[GlcT riboswitch]]
+
* [[GlcT regulon]], see also [[GlcT]]
 
* [[glmS ribozyme]]
 
* [[glmS ribozyme]]
* [[GlpP riboswitch]]
+
* [[GlpP regulon]], see also [[GlpP]]
* [[HutP riboswitch]]
+
* [[Gly-box]]
 +
* [[HutP regulon]], see also [[HutP]]
 
* [[L-box]]
 
* [[L-box]]
* [[LicT riboswitch]]
+
* [[LicT regulon]], see also [[LicT]]
 
* [[M-box]]
 
* [[M-box]]
 
* [[preQ1 riboswitch]]
 
* [[preQ1 riboswitch]]
* [[PyrR riboswitch]]
+
* [[PyrR regulon]], see also [[PyrR]]
* [[RplT riboswitch]]
+
* [[RplT regulon]], see also [[RplT]]
* [[SacT riboswitch]]
+
* [[SacT regulon]], see also [[SacT]]
* [[SacY riboswitch]]
+
* [[SacY regulon]], see also [[SacY]]
 
* [[S-box]]
 
* [[S-box]]
 
* [[T-box]]
 
* [[T-box]]
 
* [[Thi-box]]
 
* [[Thi-box]]
* [[TRAP riboswitch]]
+
* [[TRAP regulon]], see also [[MtrB]]
 
* [[YdaO riboswitch]]
 
* [[YdaO riboswitch]]
 +
* [[YkkC riboswitch]]
 +
* [[yybP-ykoY motif]]
 
* [[RNA switch/ other]]
 
* [[RNA switch/ other]]
 +
 +
= [[RNases]] =
 +
* [[RNase III targets]]
 +
* [[RNase Y targets]]
  
 
= Additional regulatory mechanisms =
 
= Additional regulatory mechanisms =
 +
* [[BmrB regulon]], see also [[BmrB]]
 +
* [[CitB regulon]], see also [[CitB]]
 +
* [[ComN regulon]], see also [[ComN]]
 +
* [[CsrA regulon]], see also [[CsrA]]
 +
* [[FbpB regulon]], see also ''[[FbpB]]''
 +
* [[fsrA regulon]], see also ''[[fsrA]]''
 +
* [[Kre regulon]], see also [[Kre]]
 +
* [[MifM regulon]], see also [[MifM]]
 +
* [[as-bsrH regulon]], see also ''[[as-bsrH]]''
 +
* [[as-yonT regulon]], see also ''[[as-yonT]]''
 +
* [[ratA regulon]], see also ''[[ratA]]''
 +
* [[RoxS regulon]], see also [[RoxS]]
 +
* [[SR1 regulon]], see also [[sr1]]
 +
* [[Stringent response]]
  
* [[CitB regulon]]
+
=Key publications=
* [[ComN regulon]]
+
<pubmed> 22235300 </pubmed>
* [[CsrA regulon]]
 
* [[FsrA regulon]]
 
* [[MifM regulon]]
 
* [[ratA regulon]]
 
* [[SR1 regulon]]
 
* [[Stringent response]]
 

Latest revision as of 09:13, 22 December 2016

Overview on the regulons in B. subtilis

Sigma factors

DNA-binding regulators

RNA switches

RNases

Additional regulatory mechanisms

Key publications

Han Zhang, Yanbin Yin, Victor Olman, Ying Xu
Genomic arrangement of regulons in bacterial genomes.
PLoS One: 2012, 7(1);e29496
[PubMed:22235300] [WorldCat.org] [DOI] (I p)