Difference between revisions of "Regulons"

From SubtiWiki
Jump to: navigation, search
m (moved Regulon to Regulons)
(→‎RNA switches)
 
(56 intermediate revisions by 3 users not shown)
Line 1: Line 1:
 
Overview on the regulons in ''B. subtilis''
 
Overview on the regulons in ''B. subtilis''
 +
 +
= [[Sigma factors]] =
 +
 +
* [[SigB regulon]], see also [[SigB]]
 +
* [[SigD regulon]], see also [[SigD]]
 +
* [[SigE regulon]], see also [[SigE]]
 +
* [[SigF regulon]], see also [[SigF]]
 +
* [[SigG regulon]], see also [[SigG]]
 +
* [[SigH regulon]], see also [[SigH]]
 +
* [[SigI regulon]], see also [[SigI]]
 +
* [[SigK regulon]], see also [[SigK]]
 +
* [[SigL regulon]], see also [[SigL]]
 +
* [[SigM regulon]], see also [[SigM]]
 +
* [[SigV regulon]], see also [[SigV]]
 +
* [[SigW regulon]], see also [[SigW]]
 +
* [[SigX regulon]], see also [[SigX]]
 +
* [[SigY regulon]], see also [[SigY]]
 +
* [[Xpf regulon]], see also [[Xpf]]
 +
* [[YlaC regulon]], see also [[YlaC]]
 +
* [[SigO-RsoA regulon]], see also [[SigO]] and [[RsoA]]
 +
 +
= DNA-binding regulators =
 +
 +
* [[Abh regulon]], see also [[Abh]]
 +
* [[AbrB regulon]], see also [[AbrB]]
 +
* [[AcoR regulon]], see also [[AcoR]]
 +
* [[AdaA regulon]], see also [[AdaA]]
 +
* [[AdeR regulon]], see also [[AdeR]]
 +
* [[AdhR regulon]], see also [[AdhR]]
 +
* [[AhrC regulon]], see also [[AhrC]]
 +
* [[AlsR regulon]], see also [[AlsR]]
 +
* [[AnsR regulon]], see also [[AnsR]]
 +
* [[AraR regulon]], see also [[AraR]]
 +
* [[ArsR regulon]], see also [[ArsR]]
 +
* [[AscR regulon]], see also [[AscR]]
 +
* [[AseR regulon]], see also [[AseR]]
 +
* [[AzlB regulon]], see also [[AzlB]]
 +
* [[BceR regulon]], see also [[BceR]]
 +
* [[BirA regulon]], see also [[BirA]]
 +
* [[BkdR regulon]], see also [[BkdR]]
 +
* [[BltR regulon]], see also [[BltR]]
 +
* [[BmrR regulon]], see also [[BmrR]]
 +
* [[BsdA regulon]], see also [[BsdA]]
 +
* [[Btr regulon]], see also [[Btr]]
 +
* [[CatR regulon]], see also [[CatR]]
 +
* [[CcpA regulon]], see also [[CcpA]]
 +
* [[CcpC regulon]], see also [[CcpC]]
 +
* [[CcpN regulon]], see also [[CcpN]]
 +
* [[CggR regulon]], see also [[CggR]]
 +
* [[ChrS regulon]], see also [[ChrS]]
 +
* [[CitR regulon]], see also [[CitR]]
 +
* [[CitT regulon]], see also [[CitT]]
 +
* [[CodY regulon]], see also [[CodY]]
 +
* [[ComA regulon]], see also [[ComA]]
 +
* [[ComK regulon]], see also [[ComK]]
 +
* [[CsoR regulon]], see also [[CsoR]]
 +
* [[CssR regulon]], see also [[CssR]]
 +
* [[CtsR regulon]], see also [[CtsR]]
 +
* [[CymR regulon]], see also [[CymR]]
 +
* [[CysL regulon]], see also [[CysL]]
 +
* [[CzrA regulon]], see also [[CzrA]]
 +
* [[DegU regulon]], see also [[DegU]]
 +
* [[DeoR regulon]], see also [[DeoR]]
 +
* [[DesR regulon]], see also [[DesR]]
 +
* [[DnaA regulon]], see also [[DnaA]]
 +
* [[DtrR regulon]], see also [[DtrR]]
 +
* [[ExuR regulon]], see also [[ExuR]]
 +
* [[FadR regulon]], see also [[FadR]]
 +
* [[FapR regulon]], see also [[FapR]]
 +
* [[FatR regulon]], see also [[FatR]]
 +
* [[Fnr regulon]], see also [[Fnr]]
 +
* [[FrlR regulon]], see also [[FrlR]]
 +
* [[FruR regulon]], see also [[FruR]]
 +
* [[Fur regulon]], see also [[Fur]]
 +
* [[GabR regulon]], see also [[GabR]]
 +
* [[GamR regulon]], see also [[GamR]]
 +
* [[GbsR regulon]], see also [[GbsR]]
 +
* [[GerE regulon]], see also [[GerE]]
 +
* [[GerR regulon]], see also [[GerR]]
 +
* [[GlnL regulon]], see also [[GlnL]]
 +
* [[GlnR regulon]], see also [[GlnR]]
 +
* [[GltC regulon]], see also [[GltC]]
 +
* [[GltR regulon]], see also [[GltR]]
 +
* [[GlvR regulon]], see also [[GlvR]]
 +
* [[GmuR regulon]], see also [[GmuR]]
 +
* [[GntR regulon]], see also [[GntR]]
 +
* [[GutR regulon]], see also [[GutR]]
 +
* [[HrcA regulon]], see also [[HrcA]]
 +
* [[HxlR regulon]], see also [[HxlR]]
 +
* [[HypR regulon]], see also [[HypR]]
 +
* [[ImmR regulon]], see also [[ImmR]]
 +
* [[IolR regulon]], see also [[IolR]]
 +
* [[KdgR regulon]], see also [[KdgR]]
 +
* [[KipR regulon]], see also [[KipR]]
 +
* [[LacR regulon]], see also [[LacR]]
 +
* [[LevR regulon]], see also [[LevR]]
 +
* [[LexA regulon]], see also [[LexA]]
 +
* [[LiaR regulon]], see also [[LiaR]]
 +
* [[LicR regulon]], see also [[LicR]]
 +
* [[LmrA regulon]], see also [[LmrA]]
 +
* [[LutR regulon]], see also [[LutR]]
 +
* [[LytT regulon]], see also [[LytT]]
 +
* [[MalR regulon]], see also [[MalR]]
 +
* [[ManR regulon]], see also [[ManR]]
 +
* [[MdtR regulon]], see also [[MdtR]]
 +
* [[MgsR regulon]], see also [[MgsR]]
 +
* [[MhqR regulon]], see also [[MhqR]]
 +
* [[MntR regulon]], see also [[MntR]]
 +
* [[Mta regulon]], see also [[Mta]]
 +
* [[MtlR regulon]], see also [[MtlR]]
 +
* [[NadR regulon]], see also [[NadR]]
 +
* [[NagR regulon]], see also [[NagR]]
 +
* [[NatR regulon]], see also [[NatR]]
 +
* [[NrdR regulon]], see also [[NrdR]]
 +
* [[NsrR regulon]], see also [[NsrR]]
 +
* [[NtdR regulon]], see also [[NtdR]]
 +
* [[OhrR regulon]], see also [[OhrR]]
 +
* [[OpcR regulon]], see also [[OpcR]]
 +
* [[PadR regulon]], see also [[PadR]]
 +
* [[PchR regulon]], see also [[YvmB]]
 +
* [[PerR regulon]], see also [[PerR]]
 +
* [[PhoP regulon]], see also [[PhoP]]
 +
* [[PsdR regulon]], see also [[PsdR]]
 +
* [[PucR regulon]], see also [[PucR]]
 +
* [[PurR regulon]], see also [[PurR]]
 +
* [[PutR regulon]], see also [[PutR]]
 +
* [[QdoR regulon]], see also [[QdoR]]
 +
* [[RemA regulon]], see also [[RemA]]
 +
* [[ResD regulon]], see also [[ResD]]
 +
* [[Rex regulon]], see also [[Rex]]
 +
* [[RghR regulon]], see also [[RghR]]
 +
* [[RhaR regulon]], see also [[RhaR]]
 +
* [[RhgR regulon]], see also [[RhgR]]
 +
* [[RocR regulon]], see also [[RocR]]
 +
* [[Rok regulon]], see also [[Rok]]
 +
* [[RsfA regulon]], see also [[RsfA]]
 +
* [[SalA regulon]], see also [[SalA]]
 +
* [[ScoC regulon]], see also [[ScoC]]
 +
* [[SdpR regulon]], see also [[SdpR]]
 +
* [[SenS regulon]], see also [[SenS]]
 +
* [[SinR regulon]], see also [[SinR]]
 +
* [[SknR regulon]], see also [[SknR]]
 +
* [[SlrR regulon]], see also [[SlrR]]
 +
* [[Spo0A regulon]], see also [[Spo0A]]
 +
* [[SpoIIID regulon]], see also [[SpoIIID]]
 +
* [[SpoVT regulon]], see also [[SpoVT]]
 +
* [[Spx regulon]], see also [[Spx]]
 +
* [[TilS-HprT regulon]], see also [[TilS]], [[HprT]]
 +
* [[ThrR regulon]], see also [[ThrR]]
 +
* [[TnrA regulon]], see also [[TnrA]]
 +
* [[TreR regulon]], see also [[TreR]]
 +
* [[WalR regulon]], see also [[WalR]]
 +
* [[Xre regulon]], see also [[Xre]]
 +
* [[XylR regulon]], see also [[XylR]]
 +
 +
* [[YcbG regulon]], see also [[YcbG]]
 +
* [[YclJ regulon]], see also [[YclJ]]
 +
* [[YcnK regulon]], see also [[YcnK]]
 +
* [[YdfI regulon]], see also [[YdfI]]
 +
 +
* [[YetL regulon]], see also [[YetL]]
 +
* [[YfhP regulon]], see also [[YfhP]]
 +
* [[YfiK regulon]], see also [[YfiK]]
 +
* [[YfmP regulon]], see also [[YfmP]]
 +
* [[YkrK regulon]], see also [[YkrK]]
 +
* [[YodB regulon]], see also [[YodB]]
 +
* [[YofA regulon]], see also [[YofA]]
 +
* [[YrkP regulon]], see also [[YrkP]]
 +
* [[YtrA regulon]], see also [[YtrA]]
 +
* [[YvrHb regulon]], see also [[YvrHb]]
 +
* [[YwbI regulon]], see also [[YwbI]]
 +
* [[YwcC regulon]], see also [[YwcC]]
 +
* [[YxdJ regulon]], see also [[YxdJ]]
 +
* [[Zur regulon]], see also [[Zur]]
 +
 +
= [[RNA switch|RNA switches]] =
 +
 +
* [[A-box]]
 +
* [[B12 riboswitch]]
 +
* [[EAR riboswitch]]
 +
* [[FMN-box]]
 +
* [[G-box]]
 +
* [[GlcT regulon]], see also [[GlcT]]
 +
* [[glmS ribozyme]]
 +
* [[GlpP regulon]], see also [[GlpP]]
 +
* [[Gly-box]]
 +
* [[HutP regulon]], see also [[HutP]]
 +
* [[L-box]]
 +
* [[LicT regulon]], see also [[LicT]]
 +
* [[M-box]]
 +
* [[preQ1 riboswitch]]
 +
* [[PyrR regulon]], see also [[PyrR]]
 +
* [[RplT regulon]], see also [[RplT]]
 +
* [[SacT regulon]], see also [[SacT]]
 +
* [[SacY regulon]], see also [[SacY]]
 +
* [[S-box]]
 +
* [[T-box]]
 +
* [[Thi-box]]
 +
* [[TRAP regulon]], see also [[MtrB]]
 +
* [[YdaO riboswitch]]
 +
* [[YkkC riboswitch]]
 +
* [[yybP-ykoY motif]]
 +
* [[RNA switch/ other]]
 +
 +
= [[RNases]] =
 +
* [[RNase III targets]]
 +
* [[RNase Y targets]]
 +
 +
= Additional regulatory mechanisms =
 +
* [[BmrB regulon]], see also [[BmrB]]
 +
* [[CitB regulon]], see also [[CitB]]
 +
* [[ComN regulon]], see also [[ComN]]
 +
* [[CsrA regulon]], see also [[CsrA]]
 +
* [[FbpB regulon]], see also ''[[FbpB]]''
 +
* [[fsrA regulon]], see also ''[[fsrA]]''
 +
* [[Kre regulon]], see also [[Kre]]
 +
* [[MifM regulon]], see also [[MifM]]
 +
* [[as-bsrH regulon]], see also ''[[as-bsrH]]''
 +
* [[as-yonT regulon]], see also ''[[as-yonT]]''
 +
* [[ratA regulon]], see also ''[[ratA]]''
 +
* [[RoxS regulon]], see also [[RoxS]]
 +
* [[SR1 regulon]], see also [[sr1]]
 +
* [[Stringent response]]
 +
 +
=Key publications=
 +
<pubmed> 22235300 </pubmed>

Latest revision as of 09:13, 22 December 2016

Overview on the regulons in B. subtilis

Sigma factors

DNA-binding regulators

RNA switches

RNases

Additional regulatory mechanisms

Key publications

Han Zhang, Yanbin Yin, Victor Olman, Ying Xu
Genomic arrangement of regulons in bacterial genomes.
PLoS One: 2012, 7(1);e29496
[PubMed:22235300] [WorldCat.org] [DOI] (I p)

Retrieved from "http://134.76.20.203/wiki//index.php?title=Regulons&oldid=209482"